use-packageify

[dot-emacs] / init.el

;; Copyright (C) 2019 Ian Kelling

;; This program is free software: you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.

;; This program is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;; GNU General Public License for more details.

;; You should have received a copy of the GNU General Public License
;; along with this program.  If not, see <http://www.gnu.org/licenses/>.

;; do m-x benchmark-init to see some benchmark stats
;;(add-to-list 'load-path "~/.emacs.d/src/benchmark-init-el/")
;;(require 'benchmark-init-loaddefs)
;;(benchmark-init/activate)

;;; init.el --- the start of customization

;; (toggle-debug-on-error) ;uncomment to help debug


;; stop from minimizing & freezing the gui
;; used to freeze emacs and was really annoying,
;; seems its changed now. no harm in keeping this though.
(global-unset-key (kbd "C-z"))

;; speed up init https://www.reddit.com/r/emacs/comments/3kqt6e/2_easy_little_known_steps_to_speed_up_emacs_start/
;; https://github.com/jwiegley/dot-emacs/blob/master/init.el
(defvar file-name-handler-alist-old file-name-handler-alist)
(setq package-enable-at-startup nil
      file-name-handler-alist nil
      message-log-max 16384
      gc-cons-threshold 402653184
      gc-cons-percentage 0.6
      auto-window-vscroll nil)

(add-hook 'after-init-hook
          `(lambda ()
             (setq file-name-handler-alist file-name-handler-alist-old
                   gc-cons-threshold 800000
                   gc-cons-percentage 0.1)
             (garbage-collect)) t)

;; 2019-6-26, 1.26s
;; ; to profile init:
;; ; uncomment the following block
;; (require 'benchmark-init)
;; (add-hook 'after-init-hook 'benchmark-init/deactivate)
;; ; Then run:
;; ; emacs -f benchmark-init/show-durations-tabulated
;; ; emacs -f benchmark-init/show-durations-tree
;; ; to catch things post-init
;; ; emacs -f benchmark-init/deactivate


;; these need to be done before the hook in order to satisfy the byte compiler or batch mode

;; this is the builtin org mode
;;(add-to-list 'load-path "~/.emacs.d/emacs/site-lisp/org")

(add-to-list 'load-path "~/.emacs.d/src/readline-complete")

;; disabled since not used.
;;(add-to-list 'load-path "~/.emacs.d/src/bbdb-csv-import")
;;(add-to-list 'load-path "~/.emacs.d/src/ghci-completion")
;;(add-to-list 'load-path "~/.emacs.d/src/mediawiki-el")
;;(add-to-list 'load-path "~/.emacs.d/src/spray")

(add-to-list 'load-path "~/.emacs.d/src/visible-mark")



(setq init-dir (file-name-directory load-file-name))
;; previously, i was doing byte-recompile-directory, but
;; now i just have one init file
(unless (equal (user-uid) 0) ; don't make root owned files
  (byte-recompile-file (expand-file-name "init.el" init-dir) nil 0)
  (when (file-exists-p "/p/c/mymu4e.el")
    (byte-recompile-file "/p/c/mymu4e.el" nil 0))
  )

;;; misc emacs documentation

;;;; how to find auto-saved files that need recovering
;; find a recently dated file in ~/.emacs.d/auto-save-list/, and see the files listed in it.
;; #file# is an auto-save file. It may or may not be different than the file is corresponds to.
;; If it is different, emacs will give a message about recovering it when you open it.

;;;; misc org functions

;; ;; these are usefull with (goto-char)
;; ;; find named entity, other than headline
;; (org-find-entry-with-id "string-number-or-symbol")

;; (org-find-exact-headline-in-buffer "heading" nil t)

;; ;; remove any indent level which is throughout the buffer
;; (org-do-remove-indentation)


;;;; gnus

;; good info http://www.emacswiki.org/emacs/GnusTutorial
;; good info http://www.emacs.uniyar.ac.ru/doc/em24h/emacs183.htm


;; After downloading mailing list archives, once you have an mbox file,
;; there are rather straightforward ways to get it into any mail program,
;; but I will cover gnus, which I use and is a bit tricky.

;; gnus has a native search (limited, too slow for body text searches), and external search engine integration.
;; gnus manual recommends converting to maildir for searching local mail, but importing lots of maildir messages to gnus
;; takes 10+ minutes, so scratch that option. it suggests 2 alternate options
;; mairix. for mbox, it doesn't integrate 100% with gnus, it copies the search results to a mbox
;; and tells gnus to make a group of that mbox and display it. This means the read state won't be persistent, but otherwise
;; works great.

;; local imap server which will use the mbox and provide search.
;; dovecot is modular, theres a dovecot-common which uses recommends to install i guess it's most used modules. Its
;; description is completely not useful. Anyways, I'm not sure if there is any benefit to installing this over just the
;; module we need.
;; pi dovecot-imapd

;; dovecot by default also makes a an inbox folder based on the normal local mail location /var/mail/<username>
;; those locations are adjustable and well documented via the var mail_location in
;; /etc/dovecot/conf.d/10-mail.conf
;; I forward my local mail, didn't see immediately how to turn off the inbox, but it will always be empty, so I left as
;; is. you could make the var be empty, which apparently has the same effect.

;; Originally just linked the default location ~/.mail, but I changed to altering the config since ~/.mail since it seems
;; other things like postfix use that location

;; based on http://roland.entierement.nu/blog/2010/09/08/gnus-dovecot-offlineimap-search-a-howto.html
;; other links that poped up contained outdated, innacurate information
;; http://sachachua.com/blog/2008/05/geek-how-to-use-offlineimap-and-the-dovecot-mail-server-to-read-your-gmail-in-emacs-efficiently/
;; http://www.emacswiki.org/emacs/JamesFerguson
;; http://www.sanityinc.com/articles/read-mailing-lists-in-emacs-over-imap/

;; Within emacs you can move messages between mbox and maildir etc, which is a nice flexibility.



;; doc group for mbox:
;; in gnus, do gnus-group-make-doc-group (G f in groups buffer) and point to the file

;; info about groups created within gnus is stored in ~/.newsrc.eld
;; also stored is a duplication of what email messages are read/unread,
;; what newsgroups are subsribed to and read/unread,
;; probably more stuff, everything that gnus saves.


;; searching the body of the messages, i cut off after a few minutes.
;; i can grep the file in just a couple seconds


;; random side note
;; we can also get mbox from gmane
;; http://notmuchmail.org/howto/#index7h2


;; gnus can't search mboxes except with its builtin search which is extremely slow. mairix can do mbox files from the command
;; line, but not from within gnus, but from mairix.el, which can then open the results in gnus

;; mbox can be converted to maildir easily, but gnus loads lots of maildir messages extremely slow. it parses all the
;; headers and generates a nov file for each.

;; nnfolder-generate-active-file

;; to reset things, when changing mail group. I duno all the proper way, but it works to delete
;; ~/Mail ~/.newsrc.eld ~/.newsrc-dribble


;;;;; mail sources vs select methods background
;; I found this very confusing when first reading through the manual.  "mail sources" is a term that does not simply mean
;; sources of mail, it is much narrower for gnus. sources of mail can be either "mail sources" or select methods. Mail
;; sources will move mail to ~/Mail (not sure what format), and split it into groups according to variables. You can use
;; "mail sources" for maildir / imap, but those can also be read via select methods, which do not move the mail from their
;; location, but use them in their native format. This is what I want to do, and I can simply ignore mail
;; sources. Confusing terminology is that "fetching mail" "scanning mail", lots of things mail doesn't mean all mail, it
;; means specifically from "mail sources". The words "articles" and "news" is used in connection with select methods, aka my actual mail.



;;;;; caching background

;; caching:
;; there is also ~/News/cache, filled with a bunch of articles, like 300 megs. can't figure out why.
;; Grepped for caching in the manual, found 2 main things.
;; cache is for 2 purposes. to cache locally, and to keep articles from expiring, called persistence
;; gnus-use-cache, which puts things if they are
;; gnus-cache-enter-articles
;; things go in cache when they are marked certain ways by default, ticked and dormant
;; and read articles are moved out of the cache
;; still no idea why i have a bunch in the cache, but I set a var so that my mail won't get cached
;; I'm gonna delete the cache, and check on it later see what exactly is going in there
;; And of course, I moved ~/News to my encrypted drive and symlinked it



;;; things that should be at the beginning

;; from its README.md
(eval-when-compile
  (require 'use-package))


;; Ubiquitous Packages. these could go anywhere actually
(use-package saveplace
  :unless noninteractive
  :config
  (save-place-mode 1))
;; find file at point
(use-package ffap)


(setq package-archives
      (quote
       (("gnu" . "https://elpa.gnu.org/packages/")
        ("MELPA" . "https://melpa.org/packages/"))))

;;(add-to-list 'package-archives
;;             '("marmalade" .
;;               "http://marmalade-repo.org/packages/"))

;; down atm 2020-08-30
;;(add-to-list 'package-archives '("org" . "http://orgmode.org/elpa/") t)


;; keep our init.el clean, by moving customization elisp to it's own file
(setq custom-file "~/.emacs.d/custom.el")
(load custom-file 'noerror)


;;; auto-complete

;; auto-completion in minibuffer
;; disabled while I look for another alternative
;;(icomplete-mode)

(require 'auto-complete-config)
(ac-config-default)


;; complete after 1 char instead of default 2
(setq ac-auto-start 1)
(setq ac-delay 0.001)

(add-to-list 'ac-modes 'org-mode 'sql-mode)


;; for org mode completion source taken from wiki.
;; it did not work. no idea why. todo, investigate
;; the ac-sources code is at http://www.emacswiki.org/emacs/AutoCompleteSources
;; i've deleted it here so as to save space and not spam this file
;;(defun my-ac-org-mode ()
;;  (setq ac-sources (append ac-sources '(ac-source-org))))


;; this makes the org-self-insert command not do a flyspell spell check.
;; low priority thing to look into sometime
(ac-flyspell-workaround)


(define-key ac-completing-map (kbd "<up>") nil)
(define-key ac-completing-map (kbd "<down>") nil)
(define-key ac-completing-map (kbd "<S-return>") 'ac-expand)
(define-key ac-completing-map "\t" 'ac-complete)
;;(define-key ac-completing-map (kbd "<tab>") 'ac-complete)
(define-key ac-completing-map (kbd "TAB") 'ac-complete)



;;; auto-complete readline-complete

(require 'readline-complete)
;; not sure how I made these, but I deleted, and
;; it would be nice to make them again sometime
;;(require 'src-loaddefs)

;; disabled cuz broken
;; redefining function in readline-complete so ac-complete only uses readline as a source
(defun ac-rlc-setup-sources ()
  "Add me to shell-mode-hook!"
  (setq ac-sources '(ac-source-shell)))
(add-hook 'shell-mode-hook 'ac-rlc-setup-sources)

;; generally unnecessary, but why not
(setq explicit-shell-file-name "bash")

;; readline-complete says to add this line.
;; however, it  up my procfs directory tracking hook
;; because get-process doesn't notice the child shell.
;; instead, I've removed export EMACS=t from
;;  comint-exec-1 (the function which initially sets it)
;; by finding it in emacs sources and redefinind it here
;; and done stty echo in my bashrc
;;(setq explicit-bash-args '("-c" "export EMACS=; stty echo; bash"))

(setenv "EMACS" "")
(setq explicit-bash-args nil)
(setq comint-process-echoes t)
;; default of 30 is way too slow. todo, consider pushing this upstream
(setq rlc-attempts 5)

(add-to-list 'ac-modes 'shell-mode)

;; readline-complete recommends this (i assume this format),
;; but greping finds no reference in emacs or my .emacs.d
;; so I'm assuming it is for an older emacs
;;(setq explicit-ssh-args '("-t"))

(add-hook 'shell-mode-hook
          (lambda ()
            ;;(define-key shell-mode-map (kbd "<tab>") 'auto-complete)
            (define-key shell-mode-map (kbd "TAB") 'auto-complete)
            ))


;;; readline complete fix

;; I need this function here, where INSIDE_EMACS is replaced with LC_INSIDE_EMACS.
;; ian: last update 2017-1-7. update this periodically from upstream
;; like when we do a major emacs update
(defun comint-exec-1 (name buffer command switches)
  (let ((process-environment
         (nconc
          ;; If using termcap, we specify `emacs' as the terminal type
          ;; because that lets us specify a width.
          ;; If using terminfo, we specify `dumb' because that is
          ;; a defined terminal type.  `emacs' is not a defined terminal type
          ;; and there is no way for us to define it here.
          ;; Some programs that use terminfo get very confused
          ;; if TERM is not a valid terminal type.
          ;; ;; There is similar code in compile.el.
          (if (and (boundp 'system-uses-terminfo) system-uses-terminfo)
              (list "TERM=dumb" "TERMCAP="
                    (format "COLUMNS=%d" (window-width)))
            (list "TERM=emacs"
                  (format "TERMCAP=emacs:co#%d:tc=unknown:" (window-width))))
          (list (format "LC_INSIDE_EMACS=%s,comint" emacs-version))
          process-environment))
        (default-directory
          (if (file-accessible-directory-p default-directory)
              default-directory
            "/"))
        proc decoding encoding changed)
    (let ((exec-path (if (and command (file-name-directory command))
                         ;; If the command has slashes, make sure we
                         ;; first look relative to the current directory.
                         (cons default-directory exec-path) exec-path)))
      (setq proc (apply 'start-file-process name buffer command switches)))
    ;; Some file name handler cannot start a process, fe ange-ftp.
    (unless (processp proc) (error "No process started"))
    (let ((coding-systems (process-coding-system proc)))
      (setq decoding (car coding-systems)
            encoding (cdr coding-systems)))
    ;; Even if start-file-process left the coding system for encoding data
    ;; sent from the process undecided, we had better use the same one
    ;; as what we use for decoding.  But, we should suppress EOL
    ;; conversion.
    (if (and decoding (not encoding))
        (setq encoding (coding-system-change-eol-conversion decoding 'unix)
              changed t))
    (if changed
        (set-process-coding-system proc decoding encoding))
    proc))

;;; auto save

;; todo: patch this so i can turn it off like my-as-off-local.
;; then try it out and see if it can replace my autosave.
;; Or maybe with the new auto-save-visited-mode.
;; (use-package super-save
;;   :ensure t
;;   :config
;;   (setq super-save-exclude '("")
;;         super-save-triggers
;;         '(balance-windows
;;           next-buffer
;;           org-babel-execute-src-block
;;           other-window
;;           previous-buffer
;;           split-window-below
;;           split-window-horizontally
;;           start-process-shell-command
;;           switch-to-buffer
;;           windmove-down
;;           windmove-left
;;           windmove-right
;;           windmove-up)
;;         )
;;   (super-save-mode +1))



(setq auto-save-timeout 1) ; idle time before auto-save.

;; main hook for my auto save
(add-hook 'auto-save-hook 'my-auto-save)
;; additional hook to try to deal with emacs not auto-saving when a buffer isn't active
(add-hook 'window-configuration-change-hook 'my-auto-save-win)

;; this function from mu4e really does not like buffer saving
(advice-add 'message-send-and-exit :before 'my-as-off)
(advice-add 'message-send-and-exit :after 'my-as-on)

;; avoid window config hook saving too much, it can
;; get into loops in some random situations
(setq my-auto-save-last nil)
(defun my-auto-save-win ()
  (unless (eq (current-buffer) my-auto-save-last)
    (my-auto-save (current-buffer))))

(defun my-auto-save (&optional last)
  (when (and
         my-as
         (buffer-file-name)
         ;; mu4e has a bug right now, undo breaks when saving drafts
         (not (string= (buffer-file-name) "*draft*"))
         (buffer-modified-p)
         (not (and (boundp 'org-src-edit-buffer-p) (org-src-edit-buffer-p))))
    ;; serial is incremented on each save, so let's do a bit less of them
    (not (derived-mode-p 'dns-mode))
    (setq my-auto-save-last last)
    (let (message-log-max)
      ;; a bit of a hack to partially suppress the constant saving in the echo area
      (with-temp-message ""
        (basic-save-buffer)))))

;; in the message-send-and-exit advice, got an error because it passed an arg.
;; didn't look into why, just add ignored args.
(defun my-as-off (&rest ignore)
  (interactive)
  (setq my-as nil))

(defun my-as-off-local (&rest ignore)
  (interactive)
  (setq-local my-as nil))

(defun my-as-on (&rest ignore)
  (interactive)
  (setq my-as t))

(defun my-as-on-local (&rest ignore)
  (interactive)
  (setq-local my-as on))

;; based on suggestion in the emacs docs, redefine these 2 functions
;; to avoid prompt spamming the user when we do auto-save
(defun ask-user-about-supersession-threat (fn)
  (discard-input)
  (message
   "File for %s has changed on disk outside of emacs. Auto-save is overwriting it, however
a backup is being created in case that is not what you intended." buffer-file-name)
  (setq buffer-backed-up nil))

(defadvice ask-user-about-lock (before lock-deactivate-as activate)
  (make-local-variable 'my-as)
  (setq my-as nil)
  (message "proper autosave has been turned off for this buffer because of lock file problem.
  In this buffer, do M-x my-as-on to reenable"))

;; todo, this doesn't work consistently to override the auto-save message
(defalias 'do-auto-save-original (symbol-function 'do-auto-save))
(defun do-auto-save (&optional no-message current-only)
  "This function has been modified to wrap the original so that NO-MESSAGE
is  always set to t, since we auto-save a lot, it spams otherwise.
The original doc string is as follows:

Auto-save all buffers that need it.
This is all buffers that have auto-saving enabled
and are changed since last auto-saved.
Auto-saving writes the buffer into a file
so that your editing is not lost if the system crashes.
This file is not the file you visited; that changes only when you save.
Normally we run the normal hook `auto-save-hook' before saving.


A non-nil NO-MESSAGE argument means do not print any message if successful.
A non-nil CURRENT-ONLY argument means save only current buffer."
  (interactive)
  (do-auto-save-original t current-only))

;; enable MY auto-save
(my-as-on)

;;; backups, separate from auto-save


;; set backup file location
(setq backup-directory-alist '(("." . "~/.editor-backups")))
(setq auto-save-file-name-transforms
      '((".*" "~/.editor-backups/" t)))

(setq version-control t ;; Use version numbers for backups
      kept-new-versions 100
      kept-old-versions 2
      delete-old-versions t ;; delete old versions silently
      ;; assume hard linked files are done on purpose, don't screw them up
      backup-by-copying-when-linked t)

;; todo, the time needs to be an integer, not a vector type thing
(defun constant-backup ()
  "Backup conditioned on some time passing since last one.
  Hooked into 'before-save-hook."
  (cl-flet ((b-time (minutes)
                    (< last-backup-time
                       (- (current-time) (* 60 minutes)))))
    (when (or (not (boundp 'last-backup-time)) (and (< (buffer-size) 10000000) (b-time 5)) (b-time 30))
      (setq buffer-backed-up nil)
      (setq-local last-backup-time (current-time)))))

;; make a backup on auto-save, because the backup feature is not
;; utilized with my-auto-save, only normal interactive save.
;; todo, enable when fixed
;;(add-hook 'before-save-hook 'constant-backup)

(add-hook 'auto-save-hook 'auto-save-size-limit)

(defun auto-save-size-limit ()
  (when (and (not backup-inhibited) (> (buffer-size) 2000000))
    (message "Backups disabled for this buffer due to size > 2 megs")
    (make-local-variable 'backup-inhibited)
    (setq backup-inhibited t)))


;; ;; background:
;; ;;      the faq suggests to auto-save using
;; (setq auto-save-visited-file-name t)
;;         and to toggle auto-saving in the current buffer, type `M-x auto-save-mode'

;;         however, this is  buggy.
;;         it leaves around lock files, which can be disabled with
;;         (setq create-lockfiles nil)
;;         but it is also buggy on other things that appear to hook onto file saving
;;         so i created my own function, which originally had bugs,
;;         but new emacs version fixed all that, yay!.


;; not using, but here for documentation,
;; alternate way to enable and specify how long between autosaves.
;; number of input events between autosave.
;; lowest bound of functionality is actually about 15 input events
;; (setq auto-save-interval ...)

;;; c-like settings
;; change last thing from gnu.
;; notably this avoids brace indent after if, and 4 space indent
(setq c-default-style '((java-mode . "java")
                        (awk-mode . "awk")
                        (other . "stroustrup")))
;; for emacs itself, use
;; (setq c-default-style '((java-mode . "java")
;;                         (awk-mode . "awk")
;;                         (other . "gnu")))
;; (setq-default c-basic-offset 2)

;;; color theme

;; A Theme builder is available at http://elpa.gnu.org/themes/ along with
;; a list of pre-built themes at http://elpa.gnu.org/themes/view.html and
;; themes are available through ELPA.


(defun override-theme (arg)
  (interactive)
  (while custom-enabled-themes
    (disable-theme (car custom-enabled-themes)))
  (load-theme arg t))
(setq color-theme-is-global t)

;; temporary, make night be default

(defun toggle-night ()
  (interactive)
  (cond  ((equal (car custom-enabled-themes) 'naquadah)
          (override-theme 'leuven))
         (t
          (override-theme 'naquadah))))


;; in the leuven theme file, i made this change. will need to remake it
;; on package updates. I could fork, but its a pretty simple change
;; < `(default ((,class (:foreground "#333333" :background "#FFFFFF"))))
;; > `(default ((,class (:foreground "#333333" :background "#F6F6F0"))))
(override-theme 'leuven)


;; disable color thing with this:
;;(disable-theme (car custom-enabled-themes))

;; decent dark themes

;;(override-theme 'tangotango)
;;(override-theme 'deeper-blue)
;;(override-theme 'tango-dark)
;;(override-theme 'tsdh-dark)

;;(override-theme 'heroku)
;;(override-theme 'inkpot)  ;; part of inkpot-theme package
;;(override-theme 'naquadah) ; org mode features, part of  naquadah-theme package
;;(override-theme 'spolsky) ;; part of sublime-themes package
;;(override-theme 'twilight-anti-bright)  ;; from twilight-anti-bright-theme package

;; interesting but not usable colors
;;(override-theme 'cyberpunk) ; cool org mode features, from cyberpunk-theme package
;;(override-theme 'wombat) ; cursor not visible enough. from a wombat package, not sure which
;;(override-theme 'misterioso) ; cursor not visible enough

;;decent light themes
;;(override-theme 'alect-light) ; theres a -alt version, don't see a dif. could use this without dimming. from alect-something package
;;(override-theme 'occidental) ; from occidental-theme package


;;color-theme is deprecated in emacs 24.

;; theme packages i tried then removed:
;; ignored ones that didn't use the new theme engine

;;66 packages (zenburn-theme-2.1, zen-and-art-theme-1.0.1, waher-theme-20130917.7, ujelly-theme-1.0.35, twilight-theme-1.0.0, twilight-bright-theme-20130605.143, twilight-anti-bright-theme-20120713.316, tronesque-theme-1.3, tron-theme-12, toxi-theme-0.1.0, tommyh-theme-1.2, tango-2-theme-1.0.0, sunny-day-theme-20131203.1250, sublime-themes-20140117.323, subatomic-theme-20131011.1048, soothe-theme-0.3.16, soft-morning-theme-20131211.1342, soft-charcoal-theme-20130924.1206, sea-before-storm-theme-0.3, purple-haze-theme-20130929.1751, phoenix-dark-pink-theme-20130905.941, phoenix-dark-mono-theme-20130306.1215, pastels-on-dark-theme-0.3, obsidian-theme-20130920.937, nzenburn-theme-20130513, noctilux-theme-20131019.31, mustang-theme-20130920.939, monokai-theme-0.0.10, molokai-theme-20130828.0, late-night-theme-0.0, jujube-theme-0.1, ir-black-theme-20130302.2355, gruvbox-theme-20131229.1458, gruber-darker-theme-0.6, grandshell-theme-20140118.1003, github-theme-0.0.3, gandalf-theme-0.1, flatland-theme-20131204.858, django-theme-20131022.202, deep-thought-theme-0.1.1, dakrone-theme-20131212.1159, colorsarenice-theme-20131128.1106, color-theme-wombat+-0.0.2, color-theme-wombat-0.0.1, color-theme-twilight-0.1, color-theme-tango-0.0.2, color-theme-solarized-20120301, color-theme-sanityinc-solarized-2.25, color-theme-railscasts-0.0.2, color-theme-monokai-0.0.5, color-theme-molokai-0.1, color-theme-ir-black-1.0.1, color-theme-heroku-1.0.0, color-theme-github-0.0.3, color-theme-eclipse-0.0.2, color-theme-dpaste-0.0.1, color-theme-dawn-night-1.0, color-theme-colorful-obsolescence-0.0.1, color-theme-cobalt-0.0.2, color-theme-20080305.34, clues-theme-20130908.801, busybee-theme-20130920.942, bubbleberry-theme-0.1.2, mblage-theme-20130715.621, anti-zenburn-theme-20140104.1542, ample-zen-theme-0.2)




;;; cross session settings

(use-package recentf
  ;; defer & commands from jwiegley
  :defer 10
  :commands (recentf-mode
             recentf-add-file
             recentf-apply-filename-handlers)
  :config
  (recentf-mode 1)
  (setq recentf-max-saved-items 400
        recentf-max-menu-items 15)
  )

(use-package saveplace
  :unless noninteractive
  :config
  save-place-version-control 'nospecial
  save-place-limit 4000
  save-place-file "~/.emacs.d/places"
  (save-place-mode 1))


;; savehist keeps track of some history search entries
(use-package savehist
  :unless noninteractive
  :config
  (setq savehist-additional-variables '(kill-ring search-ring regexp-search-ring)
        ;; save every minute
        savehist-autosave-interval 60
        ;; keep the home clean
        savehist-file "~/.emacs.d/.savehist")
  (savehist-mode 1))

;;; dired

;; dired - reuse current buffer by pressing 'a'
(put 'dired-find-alternate-file 'disabled nil)

;;; mu4e

;; alsot tried notmuch, it had some glitches, and it's config has a list
;; of folders which i'd rather not publish, so it's config is archived.

;;(add-to-list 'load-path "/usr/local/share/emacs/site-lisp/mu4e")
;;(add-to-list 'load-path "/usr/share/emacs/site-lisp/mu4e")
;;  (require 'mu4e)

;; (setq mu4e-headers-results-limit 2000)



(defun my-mu4e-init ()
  (setq mu4e-headers-fields (delq (assoc :mailing-list mu4e-headers-fields) mu4e-headers-fields))
  ;; it's implemented in mu4e, but not in the actions list for
  ;; some reason.
  (add-to-list 'mu4e-view-actions
               '("browser view" . mu4e-action-view-in-browser) t)

  (add-to-list 'mu4e-headers-actions
               '("from this sender" . mu4e-action-msgs-by-this-sender) t)
  (add-to-list 'mu4e-view-actions
               '("from this sender" . mu4e-action-msgs-by-this-sender) t)
  ;; normally, you would add to this, but we want to
  ;; modify unread messages. the first 4 are defined by default.
  (setq mu4e-bookmarks
        `( ,(make-mu4e-bookmark
             :name  "Unread messages"
             ;; old less restrictive unread, for adapting in the future:
             ;; flag:unread AND NOT flag:trashed AND NOT maildir:/Junk AND NOT maildir:/fwfw AND NOT maildir:/log
             :query "flag:unread maildir:/INBOX"
             :key ?u)
           ,(make-mu4e-bookmark
             :name "Today's messages"
             :query "date:today..now"
             :key ?t)
           ,(make-mu4e-bookmark
             :name "Last 7 days"
             :query "date:7d..now"
             :key ?w)
           ,(make-mu4e-bookmark
             :name "Messages with images"
             :query "mime:image/*"
             :key ?p))
        )
  )

(eval-after-load "mu4e" '(my-mu4e-init))

(setq
 ;; message mode prompted me on first message.
 ;; a function which describes options then sets this
 ;; the other options were to use smtp directly or pass to another mail client
 ;; here we use the standard sendmail interface. This applies for gnus too.
 send-mail-function (quote sendmail-send-it)
 ;; https://github.com/djcb/mu/issues/1025
 mail-user-agent 'mu4e-user-agent
 ;; common to gnus. default sendmail-query-once asks us, then sets this via customize.
 send-mail-function (quote sendmail-send-it)
 ;; use the standard imap folders
 mu4e-sent-folder   "/Sent"
 mu4e-drafts-folder "/Drafts"
 mu4e-trash-folder  "/Trash"
 ;; reindex new mail this often in seconds
 ;; show addresses instead of just names
 mu4e-view-show-addresses t
 mu4e-use-fancy-chars t
 mu4e-confirm-quit nil
 mu4e-headers-leave-behavior 'apply ;; dont ask, do whatever was marked
 ;; default 500.
 mu4e-headers-results-limit 1000
 ;; tell exim to use from: as envelope from.
 ;; exim's default is use outgoing_msg_localpart@hostname.
 mail-specify-envelope-from t

 ;; looking up the list of maildirs when doing jo from summary
 ;; can take a few seconds if we have a ton of messages.
 ;; Only take that time for the first lookup.
 ;; if we add a new maildir, just restart mu4e for it to be in that list.
 mu4e-cache-maildir-list t
 ;; default is 8, way too small for my big monitors
 mu4e-headers-visible-lines 50
 message-sendmail-envelope-from 'header
 ;; trying this out
 ;;mu4e-view-use-gnus t
 ;; had problems where mu4e and gnus would hang verifying signatures, gnus man
 ;; said this should help, but it didnt work. they still got verified.
 ;; mm-verify-option 'never
 )

;; fucks up reading unread bookmark. when that is fixed, enable it
;; (setq mu4e-update-interval 60)


;; this file includes setting up my email addresses, which are not public,
;; including
;; mu4e-user-mail-address-list
;; and a function
;; inspired by mu4e info manual, search for mu4e-compose-pre-hook.
(when (file-exists-p "/p/c/mymu4e.el")
  (load "/p/c/mymu4e.el"))

(defun my-decrypt ()
  ;; use for decrypting in mu4e
  (interactive)
  (beginning-of-buffer)
  (when (search-forward "-----BEGIN PGP MESSAGE-----" nil t)
    (read-only-mode 0)
    (let ((start (match-beginning 0))
          (end (search-forward "-----END PGP MESSAGE-----" nil t)))
      (shell-command-on-region start end "gpg2 -dq" nil t shell-command-default-error-buffer t)
      )))
(add-hook 'mu4e-view-mode-hook 'my-decrypt)

(defun iank-set-from-name (regexes)
  "If we find an address matching regex, then set that address as the to,
and whatever was used"
  (when mu4e-compose-parent-message
    (let ((found nil))
      (while (and regexes (not found))
        (setq re (car regexes)
              regexes (cdr regexes)
              found (mu4e-message-contact-field-matches
                     mu4e-compose-parent-message :to re)))
      (when found
        (setq user-full-name (car found))
        ;; we get an error unless we do this. that is a bug. I could
        ;; send a patch...  also a bug: setting message-from-style nil
        ;; doesnt work in mu4e unless user-full-name is also nil.
        (unless user-full-name
          (setq message-from-style nil))
        (setq user-mail-address (cdr found)
              mail-signature nil))
      found)))
(defun iank-set-from (regexes)
  "If we find an address matching regex, then set that address as the to,
and Ian Kelling as the name"
  (when mu4e-compose-parent-message
    (let ((found nil))
      (while (and regexes (not found))
        (setq re (car regexes)
              sig (cadr regexes)
              regexes (cddr regexes)
              found (cdr (mu4e-message-contact-field-matches
                          mu4e-compose-parent-message :to re))))
      (when found (setq user-mail-address found
                        user-full-name "Ian Kelling"))
      found)))


(defun mu-exit-wait ()
  (interactive)
  ;; taken from the mu source
  (let* ((buf (get-buffer mu4e~proc-name))
         (proc (and (buffer-live-p buf) (get-buffer-process buf))))
    (mu4e-quit)
    ;; without sleep, we get database locked by another process error when hitting u
    ;; if another mu was running.
    (if proc (sleep-for 0 1000))))

(defun fsf-mu4e ()
  (interactive)
  (my-mu4e-commmon)
  (setq
   user-mail-address "iank@fsf.org"
   iank-user-mail-address user-mail-address
   ;; WARNING: be careful editing this, there needs to be a space after --, and my editor
   ;; and git will automatically remove it unless i manually disable it.
   mail-signature fsf-sig
   ) ;; end setq
  (add-hook 'mu4e-compose-pre-hook 'my-mu4e-to)
  (mu4e))




(defun mu4e-action-msgs-by-this-sender (msg)
  "In header view, view messages by the sender of the message under point."
  (let ((from (mu4e-message-field msg :from)))
    (unless from
      (mu4e-error "No from header for this message"))
    ;; from is structured like: (("Anacron" . "root@x2.lan"))
    (mu4e-headers-search (concat "f:" (cdar from)))))



;;; elisp settings
;; when manually evaluating lisp, go into debugger on error
(setq eval-expression-debug-on-error t)


(eval-after-load "python-mode"
  '(progn
     (define-key python-mode-map (kbd "C-j") nil)))

;;; isearch
(setq
 isearch-allow-scroll t
 search-ring-update t) ;; dont start an edit when going to previous search

(defun isearch-yank-regexp (regexp)
  "Pull REGEXP into search regexp."
  (let ((isearch-regexp nil)) ;; Dynamic binding of global.
    (isearch-yank-string regexp))
  (isearch-search-and-update))

(defun isearch-yank-symbol (&optional partialp backward)
  "Put symbol at current point into search string.

     If PARTIALP is non-nil, find all partial matches."
  (interactive "P")

  (let (from to bound sym)
    (setq sym
                                        ; this block taken directly from find-tag-default
                                        ; we couldn't use the function because we need the internal from and to values
          (when (or (progn
                      ;; Look at text around `point'.
                      (save-excursion
                        (skip-syntax-backward "w_") (setq from (point)))
                      (save-excursion
                        (skip-syntax-forward "w_") (setq to (point)))
                      (> to from))
                    ;; Look between `line-beginning-position' and `point'.
                    (save-excursion
                      (and (setq bound (line-beginning-position))
                           (skip-syntax-backward "^w_" bound)
                           (> (setq to (point)) bound)
                           (skip-syntax-backward "w_")
                           (setq from (point))))
                    ;; Look between `point' and `line-end-position'.
                    (save-excursion
                      (and (setq bound (line-end-position))
                           (skip-syntax-forward "^w_" bound)
                           (< (setq from (point)) bound)
                           (skip-syntax-forward "w_")
                           (setq to (point)))))
            (buffer-substring-no-properties from to)))
    (cond ((null sym)
           (message "No symbol at point"))
          ((null backward)
           (goto-char (1+ from)))
          (t
           (goto-char (1- to))))
    (isearch-search)
    (if partialp
        (isearch-yank-string sym)
      (isearch-yank-regexp
       (concat "\\_<" (regexp-quote sym) "\\_>")))))

(defun isearch-current-symbol (&optional partialp)
  "Incremental search forward with symbol under point.

     Prefixed with \\[universal-argument] will find all partial
     matches."
  (interactive "P")
  (let ((start (point)))
    (isearch-forward-regexp nil 1)
    (isearch-yank-symbol partialp)))
;; todo, make this

(defun isearch-backward-current-symbol (&optional partialp)
  "Incremental search backward with symbol under point.

     Prefixed with \\[universal-argument] will find all partial
     matches."
  (interactive "P")
  (let ((start (point)))
    (isearch-backward-regexp nil 1)
    (isearch-yank-symbol partialp)))


;;   automatically wrap to the top of the buffer when isearch fails
(defadvice isearch-search (after isearch-no-fail activate)
  (unless isearch-success
    (ad-disable-advice 'isearch-search 'after 'isearch-no-fail)
    (ad-activate 'isearch-search)
    (isearch-repeat (if isearch-forward 'forward))
    (ad-enable-advice 'isearch-search 'after 'isearch-no-fail)
    (ad-activate 'isearch-search)))

;; Activate occur easily inside isearch
(define-key isearch-mode-map (kbd "C-o")
  (lambda () (interactive)
    (let ((case-fold-search isearch-case-fold-search))
      (occur (if isearch-regexp
                 isearch-string
               (regexp-quote isearch-string))))))
;;; lisp / elisp mode setings

(add-hook 'emacs-lisp-mode-hook 'starter-kit-remove-elc-on-save)
(defun starter-kit-remove-elc-on-save ()
  "If you're saving an elisp file, likely the .elc is no longer valid."
  (make-local-variable 'after-save-hook)
  (add-hook 'after-save-hook
            (lambda ()
              (if (file-exists-p (concat buffer-file-name "c"))
                  (delete-file (concat buffer-file-name "c"))))))


(defun emacs-lisp-mode-defaults ()
  ;; checkdoc has an annoying feature that wants a header and footer
  ;; in every elisp buffer as if they all were packages
  ;; todo, see if there is a way
  ;; to make checkdoc usable instead of just disabling it as I do here
  (if (boundp 'flycheck-checkers)
      (setq flycheck-checkers (remove 'emacs-lisp-checkdoc flycheck-checkers)))
  (eldoc-mode 1))
(add-hook 'emacs-lisp-mode-hook 'emacs-lisp-mode-defaults)

(define-key lisp-mode-map (kbd "<M-up>") 'backward-up-list)
(define-key lisp-mode-map (kbd "<M-down>") 'down-list)
(define-key emacs-lisp-mode-map (kbd "<M-up>") 'backward-up-list)
(define-key emacs-lisp-mode-map (kbd "<M-down>") 'down-list)
(define-key emacs-lisp-mode-map (kbd "<M-escape>") 'find-function-at-point)

;; interactive modes don't need whitespace checks
(defun interactive-lisp-coding-defaults ()
  (whitespace-mode -1))
(setq prelude-interactive-lisp-coding-hook 'prelude-interactive-lisp-coding-defaults)


;; ielm is an interactive Emacs Lisp shell
(defun ielm-mode-defaults ()
  (run-hooks 'prelude-interactive-lisp-coding-hook)
  (turn-on-eldoc-mode))
(add-hook 'ielm-mode-hook 'ielm-mode-defaults)

;;; modes with little configuration needed

(setq outline-minor-mode-prefix "\ 3\ 1"
      css-indent-offset 2
      ;; auto indent shell script comments
      sh-indent-comment t
      sh-here-document-word "'EOF'"
      tramp-default-method "ssh"
      ;; ediff-buffers is the main command to use
      ;; don't start another frame for the control panel
      ;; unfortunately, this doesn't allow me to use 2 frames for the diff buffers
      ;; so disable this temporarily with the next line if you want that
      ;; sometime I should setup 2 functions to explicitly do each type
      ediff-window-setup-function 'ediff-setup-windows-plain
      ;;(setq ediff-window-setup-function 'ediff-setup-windows-default)
      ;; do side by side diffs
      ediff-split-window-function 'split-window-horizontally
      ;; ediff things I tried which didn't work, which intuitively I think should
      ;; work better: I can open the second diff buffer in a new frame, and
      ;; close it's window in the first frame after starting ediff, but when I
      ;; hit n to go to the next diff, it restores the window in the first
      ;; frame. Another thing I tried is to open 2 new frames and set them up
      ;; as I want. However, if I try to open the *Ediff Control Panel* buffer
      ;; in a different window from its original one, my mouse jumps to one of
      ;; the diff frames, or if that isn't visible, the buffer just hangs
      ;; until I select the original ediff control panel window. This seems
      ;; like a bug to me. I am using a very recent development version of
      ;; emacs.

      )

;; disabled temporarily. todo, look into it
;;(add-hook 'outline-minor-mode-hook 'outshine-mode)


(when (file-exists-p "/a/h/iank-mod.el")
  (load-file "/a/h/iank-mod.el"))

;; from when i was running my own patches
;;(add-to-list 'load-path "/a/opt/ws-butler")

(require 'ws-butler)
;; todo: I think this is broken, it keeps collapsing the last line
;; for empty messages.

;; the main problem is when it deletes the blank line at the end
;; of a message with an empty body. but I might also
;; be pasting whitespace significant things in here, so
;; just don't do anything.
;; todo: propose this upstream
(add-to-list 'ws-butler-global-exempt-modes 'message-mode)

(ws-butler-global-mode)

(require 'nginx-mode)
;;The mode should automatically activate for files called nginx.conf and files under /etc/nginx - if not, you can add something like this to your init file:
;;(add-to-list 'auto-mode-alist '("/etc/nginx/sites-available/.*" . nginx-mode))

;; todo, put this on a hook with prog mode
;;(highlight-indentation-mode 1)

(add-hook 'auto-revert-tail-mode-hook
          (lambda ()
            (when (string=
                   buffer-file-name
                   "/var/log/cloudman/development/cm-service.log")
              (setq-local prev-auto-revert-max 0)
              ;; set buffer-local hook
              (add-hook 'after-revert-hook 'tail-colorize nil t))))
(defun tail-colorize ()
  (ansi-color-apply-on-region prev-auto-revert-max (point-max))
  (setq-local prev-auto-revert-max (point-max)))


;; delete active selection with self-insert commands
(delete-selection-mode t)

;; Transparently open compressed files
(auto-compression-mode t)

;; dot mode, repeats last action
(require 'dot-mode)
(add-hook 'find-file-hooks 'dot-mode-on)

;; clean up obsolete buffers automatically at midnight
(require 'midnight)

;; saner regex syntax
(require 're-builder)
(setq reb-re-syntax 'string)


;; show the name of the current function definition in the modeline
(setq which-func-modes t)
(which-function-mode 1)

;; enable winner-mode to manage window configurations
(winner-mode +1)

;; meaningful names for buffers with the same name
(require 'uniquify)
(setq uniquify-buffer-name-style 'forward
      uniquify-separator "/"
      ;; for sdx work. until I figure out a better way.
      ;; maybe something like projectile can do it,
      ;; or hacking around the status bar
      uniquify-min-dir-content 2
      uniquify-after-kill-buffer-p t ; rename after killing uniquified
      uniquify-ignore-buffers-re "^\\*") ; don't muck with special buffers


;; makefiles require tabs
;; todo: find a makefile indent function that works,
;; best I could find is this one which means don't indent at all
;;
(add-hook 'makefile-mode-hook
          (lambda ()
            (setq indent-tabs-mode t)
            (setq indent-line-function (lambda () 'no-indent))))


;; todo, turn on auto-fill just for txt files
;;(add-hook 'text-mode-hook 'turn-on-auto-fill)
(add-hook 'text-mode-hook 'turn-on-flyspell)

;; random extra highlights
(require 'volatile-highlights)
(volatile-highlights-mode t)


;; make help buffers smaller when it makes sense
(temp-buffer-resize-mode 1)


(defun my-info-init()
  (require 'info+)
  ;; based on suggestions in info+.el, I also installed  misc-fns, strings, and thingatpt+
  ;; remove some bad keybinds from info+
  (define-key Info-mode-map [mouse-4]         nil)
  (define-key Info-mode-map [mouse-5]         nil))

(add-hook 'info-mode-hook 'my-info-init)


;;; misc general settings

;; from tramp manual, use the same ssh controlmaster. I was having problems with
;; tramp prompting me for a username and pass.
(customize-set-variable 'tramp-use-ssh-controlmaster-options nil)

(setq
 auto-revert-interval 2
 ;; fix eof end of file newline
 mode-require-final-newline t
 require-final-newline t
 auto-revert-verbose nil
 auto-revert-remote-files t
 ;; save bookmarks whenever they are changed instead of just when emacs quits
 bookmark-save-flag 1
 ;; increase bookmark context size for better functionality
 bookmark-search-size 2000
 ;; https://www.emacswiki.org/emacs/FillParagraph
 ;; make list items start paragraphs.
 paragraph-start "\f\\|[ \t]*$\\|[ \t]*[-+*] "
 sh-basic-offset 2
 vc-follow-symlinks t
 )

(ivy-mode 1)
(add-hook 'text-mode-hook (lambda () (auto-fill-mode t)))
(setq counsel-find-file-at-point t)

(eval-after-load "ido"
  ;; easier to read with just spaces as separator
  (quote (setf (nth 2 ido-decorations) "   ")))

;; Seed the random-number generator
(random t)

;; easier to remember than keybinds
(defalias 'scrypt 'mml-secure-message-encrypt-pgpmime)
(defalias 'sign 'mml-secure-message-sign-pgpmime)
;; otherwise we get error on sending:
;; mml-secure-epg-sign: Couldn’t find any signer names; try setting `mml-secure-smime-sign-with-sender'.
;; i dunno why sign+encrypt doesnt cause this, seems kinda dumb,
;;
(setq mml-secure-openpgp-sign-with-sender t)
;; i dun use smime, the smime signing fails complaining it doesnt have
;; my key. todo: learn about smime
(setq mml-secure-smime-sign-with-sender t)
(defun encrypt ()
  (interactive)
  (mml-secure-message-encrypt-pgpmime 'dontsign))

;; don't highlight the region.
(set-face-background 'region nil)

;; this fixes save error for python example code
(define-coding-system-alias 'UTF-8 'utf-8)

;; i don't use frame titles, but if I ever do
;; this starter kit setting is probably good
(if window-system (setq frame-title-format '(buffer-file-name "%f" ("%b"))))


;;(prefer-coding-system 'utf-8-unix)

;; remove ugly 3d box feature
(set-face-attribute 'mode-line nil :box nil)

(add-to-list 'default-frame-alist
             '(font . "DejaVu Sans Mono-11"))
                                        ; the default will jump 2 sizes.
(setq text-scale-mode-step 1.1)
(setq font-lock-maximum-decoration t
      inhibit-startup-message t
      transient-mark-mode t
      delete-by-moving-to-trash t
      shift-select-mode nil
      truncate-partial-width-windows nil
      uniquify-buffer-name-style 'forward
      oddmuse-directory "~/.emacs.d/oddmuse"
      echo-keystrokes 0.1
      mark-ring-max 160
      sort-fold-case t  ; case insensitive line sorting
      global-mark-ring-max 1000
      ;; the visible bell seems to lag the ui
      ;;visible-bell t
      ;; turn off audible bell
      ;; https://www.emacswiki.org/emacs/AlarmBell
      ring-bell-function 'ignore
      case-replace nil
      revert-without-query '(".*")
      ;; don't pause display code on input.
      ;; smoother display performance at slight cost of input performance
      redisplay-dont-pause t
      font-lock-maximum-decoration t) ; probably default and not necesary


(setq-default indent-tabs-mode nil ;; don't use tabs to indent
              cursor-type 'box
              fill-column 72

              ;; wrap at word boundaries instead of mid-word
              word-wrap t
              imenu-auto-rescan t
              indicate-empty-lines t) ; mark end of buffer

(require 'smooth-scroll)
;; long gnus summary buffers lags too much with this,
;; but I like it enough to leave it enabled by default
;; and crank up the step size to be faster
;; and it doesn't have a way to enable it only for certain modes etc.
;; todo sometime, make it work for certain modes only
(smooth-scroll-mode t)
;; its too slow with the default of 2
(setq smooth-scroll/vscroll-step-size 6)
;; sublimity doesn't work as good going fast by default
;; smooth-scrolling.el, does not do smooth scrolling. its about cursor location


(blink-cursor-mode '(-4))
(menu-bar-mode -1)
(tool-bar-mode -1)


;; enable various commands
(put 'narrow-to-region 'disabled nil)
(put 'narrow-to-page 'disabled nil)
(put 'narrow-to-defun 'disabled nil)
(put 'upcase-region 'disabled nil)
(put 'downcase-region 'disabled nil)
(put 'scroll-left 'disabled nil)
;; these from graphene, haven't read about them yet
(put 'ido-complete 'disabled nil)
(put 'ido-exit-minibuffer 'disabled nil)
(put 'dired-find-alternate-file 'disabled nil)
(put 'autopair-newline 'disabled nil)



;;disable and minimize various prompts/messages
(fset 'yes-or-no-p 'y-or-n-p)
(setq confirm-nonexistent-file-or-buffer nil
      inhibit-startup-message t
      inhibit-startup-echo-area-message t
      inhibit-startup-screen t
      kill-buffer-query-functions (remq 'process-kill-buffer-query-function
                                        kill-buffer-query-functions))


;; exit without bothering me
;; http://stackoverflow.com/questions/2706527/make-emacs-stop-asking-active-processes-exist-kill-them-and-exit-anyway/2708042#2708042
(add-hook 'comint-exec-hook
          (lambda () (set-process-query-on-exit-flag (get-buffer-process (current-buffer)) nil)))
;; based on save-buffers-kill-emacs help string, don't ask about clients when exiting
;; apparently this would need to be in some later hook. dunno where is best, but this works
(defadvice save-buffers-kill-emacs (before no-client-prompt-advice activate)
  (setq kill-emacs-query-functions (delq 'server-kill-emacs-query-function kill-emacs-query-functions)))



;; (custom-set-faces
;;  ;; setting header-line-format to " " as a hack for a top margin the oly thning I could find to do a top margin
;;  '(header-line ((t (:background "default" :foreground "default" :overline nil :underline nil))))
;;  ;; don't highlight the region
;;  '(region ((t nil))))
(setq-default header-line-format " ")


(setq initial-scratch-message nil)


;; vertical margin background.
;; google turned up: http://lists.gnu.org/archive/html/help-gnu-emacs/2014-03/msg00544.html
;; the xresource doesn't work for me, probably an xmonad thing.

;; figured out I needed to customize the header line face. To find the face, M-x list-faces-display or just google / search
;; info,
;; then M-x customize-face
;; header-line
;; unchecked some stuff so that it inherits from default.

;;; misc function definitions


(defun fill-buffer ()
  (interactive)
  (save-mark-and-excursion
    (beginning-of-buffer)
    (while (= (forward-line) 0)
      (fill-paragraph))))


(defun next-backup-dir ()
  "In a directory listing from rsync -n,
Go to the next directory based on where the cursor is."
  (interactive)
  (let* ((start-col (current-column))
         (end-col (progn (skip-chars-forward "^/\n") (current-column)))
         (dir (progn
                (beginning-of-line 1)
                (buffer-substring-no-properties (point) (+ (point) end-col)))))
    (message dir)
    (forward-line 1)
    (while (and (not (eobp))
                (string= dir (buffer-substring-no-properties (point) (+ (point) end-col))))
      (forward-line 1))
    (forward-char-same-line start-col)))
;; copy paste this for fast keybind
;;(local-set-key (kbd "<kp-enter>"))


(defun goto-buffer-or-find-file (file-name)
  "If buffer is with FILE-NAME exists, go to it, else open the file using full path."
  (interactive)
  (let ((b (get-buffer (file-name-nondirectory file-name))))
    (if b
        (switch-to-buffer b)
      (find-file file-name))))




;; todo, i think this is broken. perhaps the last goto-char is not accounting for buffer or something
(defun unpop-global-mark ()
  "Unpop off global mark ring. Does nothing if mark ring is empty."
  (interactive)
  (when global-mark-ring
    (setq global-mark-ring (cons (copy-marker (mark-marker)) global-mark-ring))
    (let ((lm (car (last global-mark-ring))))
      (set-marker (mark-marker) (marker-position lm) (marker-buffer lm)))
    (when (null (mark t)) (ding))
    (setq global-mark-ring (nbutlast global-mark-ring))
    (goto-char (marker-position (mark-marker)))))

(defun indent-buffer ()
  "Indents the entire buffer."
  (interactive)
  (cond ((derived-mode-p 'org-mode)
         (org-indent-region (point-min) (point-max)))
        ((derived-mode-p 'python-mode)
         (py-autopep8))
        (t
         (indent-region (point-min) (point-max)))))


;; TODO doesn't work with uniquify
(defun rename-file-and-buffer ()
  "Renames current buffer and file it is visiting."
  (interactive)
  (let ((name (buffer-name))
        (filename (buffer-file-name)))
    (if (not (and filename (file-exists-p filename)))
        (message "Buffer '%s' is not visiting a file!" name)
      (let ((new-name (read-file-name "New name: " filename)))
        (cond ((get-buffer new-name)
               (message "A buffer named '%s' already exists!" new-name))
              (t
               (rename-file name new-name 1)
               (rename-buffer new-name)
               (set-visited-file-name new-name)
               (set-buffer-modified-p nil)))))))



(defun sudo-edit (&optional arg)
  (interactive "P")
  (if (or arg (not buffer-file-name))
      (find-file (concat "/sudo::" (ido-read-file-name "File: ")))
    (find-alternate-file (concat "/sudo::" buffer-file-name))))



(defun backward-symbol (arg)
  (interactive "p")
  (forward-symbol (- arg)))

;;; mode line
;; make window title be the buffer name
(setq frame-title-format "%b")

;; -----------------------------
;; fixing up the mode line
;; modified from mastering emacs blog
;; ----------------------------

(defvar mode-line-cleaner-alist
  `((auto-complete-mode . "")
    (yas/minor-mode . "")
    (paredit-mode . "")
    (auto-fill-function . "")
    (eldoc-mode . "")
    (abbrev-mode . "")
    (flyspell-mode . "")
    (glasses-mode . "")
    (dot-mode . "")
    (yas-global-mode . "")
    (yas-minor-mode . "")
    (undo-tree-mode . "")
    (volatile-highlights-mode . "")
    (highlight-symbol-mode . "")
    ;; Major modes
    (lisp-interaction-mode . "λ")
    (hi-lock-mode . "")
    (python-mode . "Py")
    (emacs-lisp-mode . "EL")
    (nxhtml-mode . "nx"))
  "Alist for `clean-mode-line'.

  When you add a new element to the alist, keep in mind that you
  must pass the correct minor/major mode symbol and a string you
  want to use in the modeline *in lieu of* the original.")


(defun clean-mode-line ()
  (interactive)
  (loop for cleaner in mode-line-cleaner-alist
        do (let* ((mode (car cleaner))
                  (mode-str (cdr cleaner))
                  (old-mode-str (cdr (assq mode minor-mode-alist))))
             (when old-mode-str
               (setcar old-mode-str mode-str))
             ;; major mode
             (when (eq mode major-mode)
               (setq mode-name mode-str)))))

                                        ; disabled
                                        ;  (add-hook 'after-change-major-mode-hook 'clean-mode-line)


;; alias the new `flymake-report-status-slim' to
;; `flymake-report-status'
(defalias 'flymake-report-status 'flymake-report-status-slim)
(defun flymake-report-status-slim (e-w &optional status)
  "Show \"slim\" flymake status in mode line."
  (when e-w
    (setq flymake-mode-line-e-w e-w))
  (when status
    (setq flymake-mode-line-status status))
  (let* ((mode-line " Φ"))
    (when (> (length flymake-mode-line-e-w) 0)
      (setq mode-line (concat mode-line ":" flymake-mode-line-e-w)))
    (setq mode-line (concat mode-line flymake-mode-line-status))
    (setq flymake-mode-line mode-line)
    (force-mode-line-update)))


(defun my-after-change-major-mode-hook ()
  (setq mode-line-mule-info nil
        minor-mode-alist nil
        mode-line-position nil)) ; todo, make only flymake status show up

(add-hook 'after-change-major-mode-hook 'my-after-change-major-mode-hook)

;;; mouse related
;;;; settings
(setq focus-follows-mouse t
      mouse-autoselect-window t
      xterm-mouse-mode t)
;;;; move-mouse-to-point
;; todo, this is buggy with multiple windows open.
(defun move-mouse-to-point ()
  (interactive)
  (let* ((pos (posn-col-row (posn-at-point)))
         (x (+ (car pos) 2)) ; no idea why this is off by 1-2
         (y (cdr pos)))
    (set-mouse-position (selected-frame) x y)))

;;; org mode

;; todo work on org-cycle-emulate-tab

;; todo, this doesn't work for a non-standard keybind
;;(setq org-special-ctrl-k t)

;; todo, generally fix org mode keys
;; todo, org-mark-element, unbdind from M-h, bind to mark defun key

                                        ;(org-babel-do-load-languages
                                        ; 'org-babel-load-languages
                                        ; '((emacs-lisp . t)
                                        ;   (sh . t)))



;; make shell work like interactive bash shell
(setq org-babel-default-header-args:sh
      '((:results . "output") (:shebang . "#!/bin/bash -l")))

;; my patch to output stderr
(setq org-babel-use-error-buffer nil)

                                        ;
;; org-mode manual suggests these, but I haven't used them.
;;(global-set-key "\C-cl" 'org-store-link)
;;(global-set-key "\C-ca" 'org-agenda)
;; this got in the way of a haskell mode command
;;(global-set-key "\C-cb" 'org-iswitchb)



;; org-src-tab-acts-natively t ; broken option. using next instead, todo fix

(setq org-src-fontify-natively t ; make babel blocks nice
      org-adapt-indentation nil
      org-src-preserve-indentation t
      ;; The most basic logging is to keep track of when a TODO item was finished.
      org-log-done 'time
      ;; use a drawer to keep the logs tidy
      org-log-into-drawer t
      org-extend-today-until 0
      org-startup-truncated nil
      org-clock-persist t
      org-use-sub-superscripts "{}"
      org-export-with-sub-superscripts nil
      org-clock-mode-line-total 'today
      ;; global STYLE property values for completion
      org-global-properties (quote (("STYLE_ALL" . "habit")))
      org-special-ctrl-a/e t  ;; home and end work special in headlines
      org-completion-use-ido t
      org-catch-invisible-edits 'smart)

(setq
 org-default-notes-file "/a/t.org"
 org-directory "/p")

;; modeilne populated from (org-clock-get-clocked-time)
;; which is populated from the var org-clock-total-time
;; which is populated by a function which starts from (org-clock-get-sum-start)
;;

(eval-after-load "org"
  '(org-clock-persistence-insinuate))

(defun time-to-org-day (time)
  (round (time-to-number-of-days
          (time-subtract time (list 0 (* 3600 org-extend-today-until) 0)))))

(defun my-org-confirm-babel-evaluate (lang body)
  (not (or (string= (buffer-file-name) "/a/t.org")
           )))
(setq org-confirm-babel-evaluate 'my-org-confirm-babel-evaluate)


(defun org-time-stamp-with-time (arg)
  (interactive "P")
  ;; '(4) is the argument passed by universal prefix
  (org-time-stamp (if arg arg '(4)) t))

;; based on http://stackoverflow.com/questions/3758139/variable-pitch-for-org-mode-fixed-pitch-for-tables
;; keywords: proportional font, monospace

(defun variable-pitch-on ()
  (variable-pitch-mode 1))
(add-hook 'fundamental-mode-hook 'variable-pitch-on)
(add-hook 'org-mode-hook 'variable-pitch-on)
(add-hook 'text-mode-hook 'variable-pitch-on)
(defun variable-pitch-off ()
  (variable-pitch-mode 0))
(add-hook 'yaml-mode-hook 'variable-pitch-off)

(eval-after-load "org" '(my-org-face-init))

(defun my-org-face-init()
  (set-face-attribute 'org-table nil :family (face-attribute 'fixed-pitch :family))
  (set-face-attribute 'org-code nil :family (face-attribute 'fixed-pitch :family))
  (set-face-attribute 'org-formula nil :family (face-attribute 'fixed-pitch :family))
  (set-face-attribute 'org-link nil :family (face-attribute 'fixed-pitch :family))
  (set-face-attribute 'org-block nil :family (face-attribute 'fixed-pitch :family))
  (set-face-attribute 'org-date nil :family (face-attribute 'fixed-pitch :family))
  )

(defun remove-org-binds ()
  (define-key org-mode-map (kbd "<M-return>") nil)
  (define-key org-mode-map (kbd "C-'") nil)
  (define-key org-mode-map (kbd "C-y") nil)
  (define-key org-mode-map (kbd "<C-return>") nil)
  (define-key org-mode-map (kbd "<C-M-kp-enter>") nil)
  (define-key org-mode-map (kbd "C-,") nil)
  (define-key org-mode-map (kbd "C-M-m") nil)
  (define-key org-mode-map (kbd "C-k") nil)
  (define-key org-mode-map (kbd "C-j") nil)
  (define-key org-mode-map (kbd "C-M-i") nil)
  (define-key org-mode-map (kbd "C-M-t") nil)
  (define-key org-mode-map (kbd "M-a") 'nil)
  (define-key org-mode-map (kbd "C-a") nil)
  (define-key org-mode-map (kbd "M-e") nil)
  (define-key org-mode-map (kbd "C-e") nil)
  (define-key org-mode-map (kbd "C-3") nil)
  (define-key org-mode-map (kbd "<M-left>") nil)
  (define-key org-mode-map (kbd "<M-right>") nil)
  (define-key org-mode-map (kbd "<S-return>") nil)
  (define-key org-mode-map (kbd "<tab>") nil)
  (define-key org-mode-map (kbd "<C-S-down>") nil)
  (define-key org-mode-map (kbd "<C-S-up>") nil)
  (define-key org-mode-map (kbd "<S-down>") nil)
  (define-key org-mode-map (kbd "<S-up>") nil)
  (define-key org-mode-map "\t" nil))
(add-hook 'org-mode-hook 'remove-org-binds)

;;; prog-mode-defaults


(defun prog-mode-defaults ()
  "Default coding hook, useful with any programming language."
  ;; so that I can do completion before the dialog pops up
  ;;(local-set-key (kbd "<tab>") 'auto-complete)
  (local-set-key (kbd "TAB") 'auto-complete)
  ;; todo, this is causing error message on loading file, prolly not working
  ;;(flycheck-mode +1)
  (setq ac-sources (delq 'ac-source-dictionary ac-sources))
  (highlight-symbol-mode)
  (make-local-variable 'column-number-mode)
  ;; this says do autofilling using newcomment.el. The "only" is a misnomer.
  (set (make-local-variable 'comment-auto-fill-only-comments) t)
  (column-number-mode t)
  (turn-on-smartparens-mode)

  ;; prettify lambdas
  (font-lock-add-keywords
   nil `(("(\\(lambda\\>\\)"
          (0 (progn (compose-region (match-beginning 1) (match-end 1)
                                    ,(make-char 'greek-iso8859-7 107))
                    nil))))))
(add-hook 'prog-mode-hook 'prog-mode-defaults)

;; enable flyspell in prog mode. text mode is handled
(add-hook 'prog-mode-hook 'flyspell-prog-mode)


;;; yank auto-indent
;; automatically indenting yanked text if in programming-modes
(defvar yank-indent-modes
  '(LaTeX-mode TeX-mode)
  "Modes in which to indent regions that are yanked (or yank-popped).
Only modes that don't derive from `prog-mode' should be listed here.")

(defvar yank-indent-blacklisted-modes
  '(python-mode slim-mode haml-mode)
  "Modes for which auto-indenting is suppressed.")

(defvar yank-advised-indent-threshold 2000
  "Threshold (# chars) over which indentation does not automatically occur.")

(defun yank-advised-indent-function (beg end)
  "Do indentation, as long as the region isn't too large."
  (if (<= (- end beg) yank-advised-indent-threshold)
      (indent-region beg end nil)))

(defadvice yank (after yank-indent activate)
  "If current mode is one of 'yank-indent-modes,
indent yanked text (with prefix arg don't indent)."
  (if (and (not (ad-get-arg 0))
           (not (member major-mode yank-indent-blacklisted-modes))
           (or (derived-mode-p 'prog-mode)
               (member major-mode yank-indent-modes)))
      (let ((transient-mark-mode nil))
        (yank-advised-indent-function (region-beginning) (region-end)))))

(defadvice yank-pop (after yank-pop-indent activate)
  "If current mode is one of 'yank-indent-modes,
indent yanked text (with prefix arg don't indent)."
  (if (and (not (ad-get-arg 0))
           (not (member major-mode yank-indent-blacklisted-modes))
           (or (derived-mode-p 'prog-mode)
               (member major-mode yank-indent-modes)))
      (let ((transient-mark-mode nil))
        (yank-advised-indent-function (region-beginning) (region-end)))))


;;; shell mode


;;  # eval: (outline-minor-mode)
;; # outline-regexp: "\\( *\\)# [*]\\{1,8\\} "


;; avoid stupid git crap like "warning, terminal not fully functional"
(setenv "PAGER" "cat")
;; don't store successive duplicates in comint command history
(setq comint-input-ignoredups t)

(defun add-mode-line-dirtrack ()
  (add-to-list 'mode-line-buffer-identification
               '(:propertize (" " default-directory " ") face dired-directory)))
(add-hook 'shell-mode-hook 'add-mode-line-dirtrack)


;; don't fully understand it, but it works.
;; http://www.emacswiki.org/emacs/ShellDirtrackByProcfs
(defun track-shell-directory/procfs ()
  (shell-dirtrack-mode 0)
  (add-hook 'comint-preoutput-filter-functions
            (lambda (str)
              (prog1 str
                (when (string-match comint-prompt-regexp str)
                  (cd (file-symlink-p
                       (format "/proc/%s/cwd" (process-id
                                               (get-buffer-process
                                                (current-buffer)))))))))
            nil t))
(setq comint-buffer-maximum-size 100000)
(add-to-list 'comint-output-filter-functions 'comint-truncate-buffer)
(defun new-shell ()
  (interactive)
  (shell (generate-new-buffer-name "*shell*")))
;;
(defun shell-wrap (prefix)
  "wrap the shell function, automatically generate a new name for a prefix arg"
  (interactive "P")
  (if prefix
      (new-shell)
    (shell)))

(add-hook 'shell-mode-hook 'track-shell-directory/procfs)
;;; smartparens
;; the melpa git version had a catastrophic bug I reported.
;; downgraded to marmalade version and everything is working fine.
(require 'smartparens-config)
(show-smartparens-global-mode t)


(defun gp/sp/pair-on-newline-and-indent (id action context)
  "Open a new brace or bracket expression, with relevant newlines and indent. "
  (save-excursion
    (newline)
    (indent-according-to-mode))
  (indent-according-to-mode))

;; when opening a pair, and then inserting a newline, push the closing pair to another newline
(sp-pair "{" nil :post-handlers
         '(:add ((lambda (id action context)
                   (gp/sp/pair-on-newline-and-indent id action context)) (kbd "RET"))))
(sp-pair "[" nil :post-handlers
         '(:add ((lambda (id action context)
                   (gp/sp/pair-on-newline-and-indent id action context)) (kbd "RET"))))


;; in my version, this is not a pairing.
;; not sure if it is in a future version since I reverted to marmalade
;; Don't need c-comments in strings -- they frustrate filename globs
;; (sp-pair "/*" nil :unless '(sp-in-string-p))

;; Don't need quotes to pair next to words
(sp-pair "\"" nil :unless '(sp-point-before-word-p sp-point-after-word-p))
(sp-pair "'" nil :unless '(sp-point-before-word-p sp-point-after-word-p))


;; todo, testout these mode specific settings from graphene.
;; Ruby-specific pairs and handlers

(eval-after-load "ruby"
  '(require 'smartparens-ruby))

;; Markdown
(sp-local-pair '(markdown-mode gfm-mode) "*" "*"
               :unless '(sp-in-string-p)
               :actions '(insert wrap))

;; Except in HTML
(sp-local-pair 'html-mode "\"" nil :unless '(:rem sp-point-after-word-p))




;;; spell correction
(setq
 ispell-program-name "hunspell"
 ispell-silently-savep t) ; don't prompt to save personal dictionary

(require 'rw-hunspell)
;; rw-hunspell sets up hunspell dictionary automagically.


;; Rant: Hunspell SHOULD be standard. its used by firefox and openoffice and
;; osx. In contrast, the first few words I added to aspell dictionary were
;; "emacs" "customizable" and "timestamp". Hunspell already has those,
;; thank god.

;; ispell-personal-dictionary does not document where the hunspell
;; dictionary goes by default, but it is ~/.hunspell_en_US for me


;;; tex
(setq-default TeX-PDF-mode t) ; use pdf
;; more sensible defaults based on info manual quickstart
(setq TeX-auto-save t
      TeX-parse-self t
      ;; not documented, but looking at the source, I find this
      ;; stops me from being asked what command on every C-c-c
      ;; when doing a latex document.
      TeX-command-force "LaTeX"
      )

;;; visible mark mode

;; since it is not easy to change the mark overlay priority, I change this one.
(setq show-paren-priority 999)

(defface visible-mark-active
  '((((type tty) (class mono)))
    (t (:background "magenta"))) "")

(defface mouse-cursor-face
  '((((type tty) (class mono)))
    (t (:background "DeepPink1"))) "")


(require 'visible-mark)

(setq
 visible-mark-faces '(visible-mark-face1 visible-mark-face2)
 visible-mark-forward-faces '(visible-mark-forward-face1)
 ;; highlight the last 2 marks
 visible-mark-max 2
 ;; highlight 1 forward mark
 visible-mark-forward-max 1)
;; globally activate visible-mark-mode
(global-visible-mark-mode +1)


;; todo, it doesn't seem to be exposed in elisp, but it would be nice
;; if I could define overlay faces to use inverse foreground color


;;; znc/erc
(defun chirp()
  (interactive)
  (setq vol 50)
  (when (string= (system-name) "kd") (setq vol 80))
  ;; speed is there so i can adjust and make it go slow so it plays long enough to adjust in pavucontrol
  (start-process-shell-command "ignoreme" nil (format "mpv --speed=1 --no-terminal --vo=null --volume=%d /a/bin/data/bird.mp3" vol)))
;; from https://www.emacswiki.org/emacs/ErcSound
(defun chirp-slow()
  (interactive)
  (setq vol 50)
  (when (string= (system-name) "tp") (setq vol 80))
  ;; speed is there so i can adjust and make it go slow so it plays long enough to adjust in pavucontrol
  (start-process-shell-command "ignoreme" nil (format "mpv --speed=.2 --no-terminal --vo=null --volume=%d /a/bin/data/bird.mp3" vol)))

(defun erc-my-privmsg-sound (proc parsed)
  (let* ((tgt (car (erc-response.command-args parsed)))
         (privp (erc-current-nick-p tgt)))
    (and
     privp (chirp)
     ;; We must return nil. See help for `erc-server-PRIVMSG-functions'
     nil)))

(defun erc-sound-if-not-server (match-type nickuserhost msg)
  (unless (string-match "Server:[0-9]+" nickuserhost)
    (chirp)))

(use-package erc
  :init
  (setq erc-fill-prefix ""
        ;; consider invisible frames to be unseen. seems like an obvious default
        erc-track-visibility 'visible
        ;; switch to buffer where i've been mentioned, etc instead of oldest
        erc-track-switch-direction 'importance
        ;; defaults minus fill. todo: modify the list instead of specifying it explicitly in case the defaults change
        erc-modules
        '(autojoin button completion irccontrols list match menu move-to-prompt netsplit networks noncommands readonly ring stamp track)
        ) ; end setq
  :config
  (add-hook 'erc-server-PRIVMSG-functions
            'erc-my-privmsg-sound)
  (add-hook 'erc-text-matched-hook 'erc-sound-if-not-server)
  (erc-track-mode 1))
;;; named commands
(defun rm-file-and-buffer ()
  "Removes file connected to current buffer and kills buffer."
  (interactive)
  (let ((filename (buffer-file-name))
        (buffer (current-buffer))
        (name (buffer-name)))
    (if (not (and filename (file-exists-p filename)))
        (error "Buffer '%s' is not visiting a file!" name)
      (delete-file filename)
      (kill-buffer buffer)
      (message "File '%s' successfully removed" filename))))

;;; persistent registers
;; This needs to be at the end, because I visit a file, thus setting a
;; mode, and the mode hook needs to be setup before that.

;; I'm using persistent registers instead of bookmarks. I dun use them
;; much, so the added hassle of having to set it within this file is
;; worth the benefit of only having one concept in my mind.
(dolist
    (r `(
         (?i (file . ,"~/.emacs.d/init.el"))
         (?o (file . ,"/a/work.org"))
         (?t (file . ,"/a/t.org"))
         (?s (file . ,"/usr/share/doc/exim4-base/spec.txt.gz"))
         (?w (file . ,"/p/w.org"))
         (?k (file . ,"/a/bin/ds/Arduino/Model01-Firmware/Model01-Firmware.ino"))
         (?x (file . ,"/a/x.txt"))
         ))
  (set-register (car r) (cadr r)))

(setq undo-outer-limit 100000000 ; per undo command
      undo-limit 500000000 ; undo history limit
      undo-strong-limit 600000000) ; undo history limit plus some extra


;;; undo tree mode

;; note, this has weird errors when it was before recentf-mode

(use-package undo-tree
  :config
  ;; more resilient undo-tree-history if we have its location set up front.
  (setq undo-tree-history-directory-alist '(("." . "~/.undo-tree-history"))
        undo-outer-limit 100000000 ; per undo command
        undo-limit 500000000 ; undo history limit
        undo-strong-limit 600000000 ; undo history limit plus some extra
        ;; Undo in region just happens accidentally, and throws me off
        undo-tree-enable-undo-in-region nil)
  ;; disabled due to bug, something like unknown entry in undo tree canary
  ;; (setq undo-tree-auto-save-history t)

  ;; todo, send patch undo-tree-visualize should scroll with the scroll key, instead of just pgup pgdn (aka next/prior)
  (global-undo-tree-mode)
  ;; simple way to fix that enable undo-tree starts out disabled in org-mode
  (defun undo-tree-overridden-undo-bindings-p() nil))

;;; keybinds

;;;; misc

(define-prefix-command 'terminal-key-map)
(global-set-key (kbd "\e[") 'terminal-key-map)

(global-set-key (kbd "C-x C-b") 'ibuffer)


;; isearch-occur
;; Activate occur easily inside isearch
;; from starter-kit

(define-key isearch-mode-map (kbd "C-o")
  (lambda () (interactive)
    (let ((case-fold-search isearch-case-fold-search))
      (occur (if isearch-regexp
                 isearch-string
               (regexp-quote isearch-string))))))


(defun my-isearch-toggle-regexp ()
  (interactive)
  (isearch-toggle-regexp)
  (cond (isearch-regexp
         (global-set-key (kbd "C-r") 'isearch-backward-regexp)
         (define-key global-map (kbd "<f12>") 'isearch-forward-regexp))
        (t
         (global-set-key (kbd "C-r") 'isearch-backward)
         (define-key global-map (kbd "<f12>") 'isearch-forward))))
(define-key isearch-mode-map (kbd "M-r") 'my-isearch-toggle-regexp)


(define-key Info-mode-map "x" 'Info-follow-nearest-node)


;;;; single/special keys
;;;;; tab - isearch
;; todo: this doesnt work. needs <tab>, which doesnt work in terminal. fix that.
(define-key isearch-mode-map (kbd "TAB") 'isearch-query-replace)

;;;;; f12 - isearch-forward
;; explained in http://stackoverflow.com/questions/7411920/how-to-bind-search-and-search-repeat-to-c-f-in-emacs
(global-set-key (kbd "<kp-add>") 'isearch-forward)
(global-set-key (kbd "<f12>") 'isearch-forward)
(define-key isearch-mode-map (kbd "<kp-add>") 'isearch-repeat-forward)
(define-key isearch-mode-map (kbd "<f12>") 'isearch-repeat-forward)
;; get rid of the standard completion binding, always use auto-complete
;; this didn't work very well
;;(global-set-key (kbd "TAB") 'auto-complete)
(define-key global-map [remap completion-at-point] 'auto-complete)

;;;;; end - move-end-of-line
;; taken from emacs wiki, along with home function
;; http://www.emacswiki.org/emacs/BackToIndentationOrBeginning
(defun point-in-comment ()
  "Determine if the point is inside a comment"
  (interactive)
  (let ((syn (syntax-ppss)))
    (and (nth 8 syn)
         (not (nth 3 syn)))))
(defun end-of-code-or-line (arg)
  "Move to end of line, or before start of comments depending on situation.
 Toggle back and forth positions if we are already at one.
 Comments are recognized in any mode that sets syntax-ppss
 properly."
  (interactive "P")
  (when (catch 'bol
          (let ((start (point))
                (bol (save-excursion
                       (beginning-of-line)
                       (point)))
                (eol (progn (move-end-of-line arg) (point))))
            (while (point-in-comment)
              (backward-char)
              (when (= (point) bol)
                (throw 'bol t)))
            (throw 'bol (and (not (= eol start)) (>= start (point))))))
    (move-end-of-line arg)))

(global-set-key (kbd "<end>") 'end-of-code-or-line)(add-hook 'org-mode-hook (lambda () (define-key org-mode-map (kbd "<end>") 'org-end-of-line)))

;;;;; home - back-to-indentation
(defun back-to-indentation-or-beginning ()
  (interactive)
  (if (= (point) (progn (back-to-indentation) (point)))
      (if (derived-mode-p 'org-mode)
          (org-beginning-of-line)
        (beginning-of-line))))
(global-set-key (kbd "<home>") 'back-to-indentation-or-beginning)

;;;;; s-tab - indent-buffer
;; graphical
(global-set-key (kbd "<S-iso-lefttab>") 'indent-buffer)
;; terminal
(global-set-key (kbd "<backtab>") 'indent-buffer)
;;;;; s-delete - send-shell

(global-set-key (kbd "<S-delete>") 'send-shell)

;; optional variables used by send-shell
(setq shell-send-yank-key nil)

(defun repeat-shell ()
  (interactive)
  "Repeat the last command in shell-mode, displaying the window if needed."
  (let ((shell-buffer (get-buffer "*shell*")))
    (if shell-buffer
        (buffer-window-show shell-buffer)
      (let ((original-buffer (current-buffer)))
        (funcall 'shell)
        (setq shell-buffer (current-buffer))
        (switch-to-buffer original-buffer)))
    (with-current-buffer shell-buffer
      (goto-char (point-max))
      (call-interactively 'comint-previous-input)
      ;; the t flag makes the buffer advance
      (comint-send-input nil t))))

(setq compilation-filenames '("Makefile" "makefile"))

(defun get-nearest-compilation-file ()
  "Search for the compilation file traversing up the directory tree."
  (interactive)
  (let ((dir default-directory)
        (parent-dir (file-name-directory (directory-file-name default-directory)))
        (nearest-compilation-file 'nil))
    (while (and (not (string= dir parent-dir))
                (not nearest-compilation-file))
      (dolist (filename compilation-filenames)
        (setq file-path (concat dir filename))
        (when (file-readable-p file-path)
          (setq nearest-compilation-file file-path)))
      (setq dir parent-dir
            parent-dir (file-name-directory (directory-file-name parent-dir))))
    nearest-compilation-file))
(defun run ()
  (interactive)
  "call run-fun if it is set, else run make if there is a makefile,
else save and repeat last shell command.
run-fun is meant to store file local variables, which show how to
do the main thing we want on this file, generally compile and
run.

example of setting it in a file:
;; Local Variables:
;; run-fun: merge-test
;; End: "
  (basic-save-buffer)
  (if (and (boundp 'run-fun) run-fun)
      (funcall run-fun)
    (let ((makefile (get-nearest-compilation-file)))
      (if (and makefile (stringp mode-name) (string= mode-name "C/l"))
          (compile (format
                    "make -f %s" (get-nearest-compilation-file)))
        (repeat-shell)))))


(defun send-shell ()
  (interactive)
  (send-shell-buffer "*shell*" 'shell (kbd "C-v")))

(defun send-python ()
  (interactive)
  (send-shell-buffer "*Python*" 'py-shell (kbd "C-v")))


(defun send-shell-buffer (buffer-name &optional init shell-send-yank-key)
  "Send current line or region to shell-mode buffer.
When in shell-mode, copy the current line to the
most recently visited visible window.

SHELL-SEND-YANK-KEY: key to use instead
of yank to paste into recent window. This allows compatibility with
modes like org-mode which have their own yank function."
  (if (string= (buffer-name) buffer-name)
      ;; this section is copied out of comint-send-input
      (progn
        (let ((proc (get-buffer-process (current-buffer))))
          (if (not proc) (user-error "Current buffer has no process")
            (widen)

            (let* ((pmark (process-mark proc))
                   (intxt (if (>= (point) (marker-position pmark))
                              (progn (if comint-eol-on-send (end-of-line))
                                     (buffer-substring pmark (point)))
                            (let ((copy (funcall comint-get-old-input)))
                              (goto-char pmark)
                              (insert copy)
                              copy))))

              (if (= (length intxt) 0)
                  (kill-new (comint-previous-matching-input-string "." 1))
                (kill-new intxt)))))
        (kill-append "\n" nil)
        (select-window (previous-window nil nil 'visible))
        (if (and (boundp 'shell-send-yank-key) shell-send-yank-key)
            (call-interactively (global-key-binding shell-send-yank-key))
          (yank))
        (select-window (next-window nil nil 'visible)))
    (let (start end)
      (if mark-active
          (setq start (mark)
                end (point))
        (setq start (save-excursion (beginning-of-line) (point))
              end (save-excursion (end-of-line) (point)))
        (let (line-move-visual)
          (call-interactively 'next-line)))
      (send-comint-input buffer-name start end init))))

;; supporting functions
(defun send-comint-input (buffer-name start end &optional init)
  "Input the region to BUFFER-NAME, assuming it is a comint-derived buffer.
                             Show BUFFER-NAME if it is not show.
                             Call INIT if BUFFER-NAME does not exist."
  (let ((input (filter-buffer-substring start end)))
    (send-comint-string buffer-name input init)))

(defun send-comint-string (buffer-name string &optional init)
  "Input the string to BUFFER-NAME, assuming it is a comint-derived buffer.
                             Show BUFFER-NAME if it is not show.
                             Call INIT if BUFFER-NAME does not exist."
  (let ((buffer (get-buffer buffer-name)))
    (unless buffer
      (message "nobuffer")
      ;; save-excursion etc. don't work for (shell), so I do this instead
      (if init (let ((original-buffer (current-buffer)))
                 (funcall init (and (boundp 'send-shell-buffer-name) send-shell-buffer-name))
                 (switch-to-buffer original-buffer)
                 (setq buffer (get-buffer buffer-name)))
        (error "No existing buffer found and no init function argument. ")))
    (buffer-window-show buffer)
    (with-current-buffer buffer
      (let ((proc (get-buffer-process buffer)))
        (goto-char (process-mark proc))
        (insert string)
        (comint-send-input nil t)))))

(defun buffer-window-show (&optional buffer action)
  "Like temp-buffer-window-show, but removed stuff
        relevant to it being temp or help."
  (let (window frame)
    (with-current-buffer buffer
      (when (let ((window-combination-limit
                   ;; When `window-combination-limit' equals
                   ;; `temp-buffer' or `temp-buffer-resize' and
                   ;; `temp-buffer-resize-mode' is enabled in this
                   ;; buffer bind it to t so resizing steals space
                   ;; preferably from the window that was split.
                   (if (or (eq window-combination-limit 'temp-buffer)
                           (and (eq window-combination-limit
                                    'temp-buffer-resize)
                                temp-buffer-resize-mode))
                       t
                     window-combination-limit)))
              ;; debug
              ;;(message "window-combination-limit")
              ;;(print window-combination-limit)
              (setq window (display-buffer buffer action)))
        (setq frame (window-frame window))
        (unless (eq frame (selected-frame))
          (raise-frame frame))
        (setq minibuffer-scroll-window window)
        (set-window-hscroll window 0)
        ;; Return the window.
        window))))


;; when poping help, etc, allow reusing a window in a different frame if it is visible
;; figured this out after spending quite a while reading doc string for display-buffer
;; which is the main function which uses this.
;; it will use other vars or its arg to override this,
;; but those things are often nil.
;; aha moments in reading it: ACTION = (FUNCTION-or-FUNCTIONLIST ALIST)
;; FRAME adds an association to ACTION's alist, but it's not used if ACTION arg is nil.
(setq display-buffer-fallback-action `(,(car display-buffer-fallback-action) . '(reusable-frames . visible)))
;; stop splitting windows verticallly when I open a buffer or shell
(setq split-height-threshold nil)

;;;;; s-left arrow - ---
;; cant be used in terminal
;; When I had a binding, i did this so org-mode wouldnt clobber it
;; (add-hook 'org-mode-hook
;;           (lambda ()
;;             (define-key org-mode-map (kbd "<S-left>") nil)))

;;;;; s-right arrow - keyboard-yank-primary
(defun keyboard-yank-primary ()
  (interactive)
  (let ((mouse-yank-at-point t))
    (mouse-yank-primary nil)))
;; paste selection
(global-set-key (kbd "<S-right>") 'keyboard-yank-primary)
(add-hook 'org-mode-hook
          (lambda ()
            (define-key org-mode-map (kbd "<S-right>") nil)))
;;;;; esc --- terminal dup
;; todo, test out if this can be used
;;;;; return - new line

;; todo, this doesn't set the keybind for the help minibuffer


(global-set-key (kbd "\r") 'indent-new-comment-line)

;; don't use enter for autocomplete, we use tab or something
(define-key ac-completing-map (kbd "<return>") nil)
(define-key ac-completing-map "\r" nil)

(add-hook 'org-mode-hook
          (lambda ()
            ;; copied from org-mode, replace org-enter with org-enter-indent
            (org-defkey org-mode-map "\C-m"     'org-return-indent)))


(add-hook 'comint-mode-hook
          (lambda ()
            (define-key comint-mode-map "\r" nil)
            (define-key comint-mode-map (kbd "RET") 'comint-send-input)))

(add-hook 'comint-mode-hook
          (lambda ()
            (define-key comint-mode-map "\C-m" nil)
            (define-key comint-mode-map "\C-d" nil)))

;;;;; s-return - auto-correct-prev-word
(global-set-key (kbd "<S-return>") 'flyspell-auto-correct-previous-word)
;; kp-enter is shift return in terminal
(global-set-key (kbd "<kp-enter>") 'flyspell-auto-correct-previous-word)

;;;;; s-up arrow - my-contract-region
(global-set-key (kbd "<S-up>") 'my-contract-region)
;;;;; c-up/down move 8 lines

;; compiling warns that next-line should be called interactively,
;; but we would have to do something dumb, like give it a
;; vector of keys in order to supply the 8 argument
(defun down-fast ()
  (interactive)
  (next-line 8))
(defun up-fast ()
  (interactive)
  (next-line -8))

(global-set-key (kbd "<C-up>") 'up-fast)
(global-set-key (kbd "<C-down>") 'down-fast)

;;;;; c-scroll comint prev/next prompt

(add-hook 'comint-mode-hook
          (lambda ()
            (define-key comint-mode-map (kbd "<C-mouse-4>") 'comint-previous-prompt)
            (define-key comint-mode-map (kbd "<C-mouse-5>") 'comint-next-prompt)))
;;;;; m-scroll prev/next sexp
(global-set-key (kbd "<M-mouse-4>") 'backward-sexp)
(global-set-key (kbd "<M-mouse-5>") 'forward-sexp)
;;;;; S-scroll expand/contract region
(global-set-key (kbd "<S-mouse-13>") 'my-contract-region)
(global-set-key (kbd "<S-mouse-14>") 'er/expand-region)
(global-set-key (kbd "<S-mouse-4>") 'my-contract-region)
(global-set-key (kbd "<S-mouse-5>") 'er/expand-region)

(defun my-contract-region (arg)
  (interactive "p")
  (let ((current-prefix-arg '-))
    (call-interactively 'er/expand-region)))

;; todo: define c-m scroll. i manually set to normal scrolling, i dunno why


;;;;; c-s-scroll scale text

(global-set-key (kbd "<C-S-mouse-4>") 'text-scale-increase)
(global-set-key (kbd "<C-S-mouse-5>") 'text-scale-decrease)
(global-set-key (kbd "<C-S-mouse-13>") 'text-scale-increase)
(global-set-key (kbd "<C-S-mouse-14>") 'text-scale-decrease)
(global-set-key (kbd "<C-S-down>") 'text-scale-increase)
(global-set-key (kbd "<C-S-up>") 'text-scale-decrease)


;;;;; s-up arrow er/expand-region
(global-set-key (kbd "<S-down>") 'er/expand-region)
;;;;; c-left/right move symbol

(global-set-key (kbd "<C-left>") 'backward-symbol)
(global-set-key (kbd "<C-right>") 'forward-symbol)

;;;; left primary

;;;;; M-2 shell-cd-to-file


(defun shell-cd-to-file ()
  (interactive)
  (let ((file (buffer-file-name)))
    (if file
        (send-comint-string "*shell*"
                            (concat "c " (file-name-directory file))
                            'shell)
      (message "%s" "shell-cd-to-file: buffer has no file name"))))
(global-set-key (kbd "M-2") 'shell-cd-to-file)

;;;;; C-M-2 copy-symbol
(global-unset-key (kbd "C-M-2"))
(defun copy-symbol (&optional arg)
  "Copy symbol at point into kill-ring"
  (interactive "P")
  (kill-new (thing-at-point 'symbol)))

(global-set-key (kbd "C-M-2") 'copy-symbol)

;;;;; M-3 dot-mode-execute

(global-set-key (kbd "M-3") 'dot-mode-execute)

;;;;; C-M-3 recenter-top-bottom

(global-set-key (kbd "C-M-3") 'recenter-top-bottom)

;;;;; C-q org-cycle, comint previous arg

(global-set-key (kbd "C-q") 'bicycle-cycle)
(add-hook 'org-mode-hook
          (lambda () (define-key org-mode-map (kbd "C-q") 'org-cycle)))
(define-key widget-keymap (kbd "C-q") 'widget-forward)
(add-hook 'comint-mode-hook
          (lambda () (define-key comint-mode-map (kbd "C-q") 'comint-insert-previous-argument)))

;;;;; M-q ?? unused
;;;;; C-M-q quoted-insert

(global-set-key (kbd "C-M-q") 'quoted-insert)

;;;;; C-w counsel-find-file

(global-set-key (kbd "C-w") 'counsel-find-file)

;;;;; M-w shell

(global-set-key (kbd "M-w") 'shell-wrap)

;;;;; C-e copy-line

;; todo, make repeated calls to this append the kills
(defun copy-line (&optional arg)
  "Copy lines (as many as prefix argument) in the kill ring.
        Ease of use features:
        - Move to start of next line.
        - Appends the copy on sequential calls.
        - Use newline as last char even on the last line of the buffer.
        - If region is active, copy its lines."
  (interactive "p")
  (let ((beg (line-beginning-position))
        (end (line-end-position (or arg 1))))
    (when mark-active
      (if (> (point) (mark))
          (setq beg (save-excursion (goto-char (mark)) (line-beginning-position)))
        (setq end (save-excursion (goto-char (mark)) (line-end-position)))))
    (if (eq last-command 'copy-line)
        (kill-append (buffer-substring beg end) (< end beg))
      (kill-ring-save beg end)))
  (kill-append "\n" nil)
  ;; dun need cuz I have yank-better
  ;;(beginning-of-line (or (and arg (1+ arg)) 2))
  (if (and arg (not (= 1 arg))) (message "%d lines copied" arg)))

(global-set-key (kbd "C-e") 'copy-line)

;;;;; M-e ?? unused

;;;;; C-r isearch-backward

(global-set-key (kbd "C-r") 'isearch-backward)
(add-hook 'comint-mode-hook
          (lambda ()
            (define-key comint-mode-map (kbd "C-r") 'comint-history-isearch-backward-regexp)))

;;;;; M-r ?? unused
;;;;; C-a copy buffer

(defun copy-all ()
  "Copy entire buffer to clipboard"
  (interactive)
  (clipboard-kill-ring-save (point-min) (point-max)))
(global-set-key (kbd "C-a") 'copy-all)

;;;;; C-s - c-x prefix
;; prefix key binds.
;; good info http://www.masteringemacs.org/articles/2011/02/08/mastering-key-bindings-emacs/
;; rebinding the prefix keys are tricky. apparently, some modes ignore any redefinition of a prefix key and use it explicitly,
;; so you have to dig into their key maps and redo things.
;; There are 2 simpler alternatives which have their own downsides.
;; One is cua mode, which I do not like because it smashes 2 keybinds onto 1 and limits what you can do.
;; The other is keyboard-translate, which translates the key presses before anything else.
;; The downside is that it translates them when you aren't using them as a prefix.
;; Since the swaps I'm using are all very accessible, the only downside is some mental jugling when reading docs etc about these keybinds.

;; I've seen this as an another suggestion, it was a total fail. The prefix command took over both keys.
;; (define-key key-translation-map [f12] "\C-c")
;; (define-key key-translation-map "\C-c" [left])


;;idea to remove the hook later since it is only needed at startup.
;; did not work however, and there is not a real need to fix it, so I did not investigate
;;(defun removeSwapHook ()
;;  (remove-hook 'buffer-list-update-hook 'myKeySwap)
;;  (remove-hook 'change-major-mode-hook 'removeSwapHook))
;;(add-hook 'change-major-mode-hook 'removeSwapHook)


;; went through almost all the relevant standard hooks,
;; this overcomes a known bug that (keyboard-translate) does not get applied when running emacs daemon
(add-hook 'buffer-list-update-hook (lambda () (interactive)
                                     (keyboard-translate ?\C-x ?\C-s)
                                     (keyboard-translate ?\C-s ?\C-x)
                                     (keyboard-translate ?\C-c ?\C-d)
                                     (keyboard-translate ?\C-d ?\C-c)))



;; these all don't work
;; don't know why this doesn't error but reversing the keys does
;;(keyboard-translate ?\t ?\M-\t)
;;(keyboard-translate [M-tab] [tab])
;; from what i can tell, it wants to use a keyboard-translate-table,
;; which is a char table, which is a vector indexed by chars,
;; and mod+tab is not a char (it has too many bits), it is an integer
;; it actually says it can hold vectors or strings, but that it is obsolete to do so
;;(characterp ?\M-a)
;;(characterp ?\C-a)

;;;;; C-M-s - split-window-vertically

(global-set-key (kbd "C-M-s") 'split-window-vertically)

;;;;; C-d - C-c prefix

;;;;; M-d - run

(global-set-key (kbd "M-d") 'run)

;;;;; C-M-d - swap buffer across windows
;; from http://www.emacswiki.org/emacs/TransposeWindows

(setq swapping-buffer nil)
(setq swapping-window nil)
(defun swap-buffers-in-windows ()
  "Swap buffers between two windows"
  (interactive)
  (if (and swapping-window
           swapping-buffer)
      (let ((this-buffer (current-buffer))
            (this-window (selected-window)))
        (if (and (window-live-p swapping-window)
                 (buffer-live-p swapping-buffer))
            (progn (switch-to-buffer swapping-buffer)
                   (select-window swapping-window)
                   (switch-to-buffer this-buffer)
                   (select-window this-window)
                   (message "Swapped buffers."))
          (message "Old buffer/window killed.  Aborting."))
        (setq swapping-buffer nil)
        (setq swapping-window nil))
    (progn
      (setq swapping-buffer (current-buffer))
      (setq swapping-window (selected-window))
      (message "Buffer and window marked for swapping."))))

(global-set-key (kbd "C-M-d") 'swap-buffers-in-windows)

;;;;; C-f - kill-whole-line

(global-set-key (kbd "C-f") 'kill-whole-line-wrapper)
(defun kill-whole-line-wrapper (&optional arg)
  "If we are at the end of the file, kill backwards instead of doing nothing."
  (interactive "P")
  (if (= (point) (point-max))
      (kill-whole-line -1)
    (kill-whole-line arg)))

;;;;; M-f - print-var-at-point

(defun print-var-at-point ()
  (interactive)
  (let ((v (variable-at-point)))
    (if (symbolp v)
        (message "%s: %s" v (symbol-value v))
      (message "no symbol found at point"))))
(global-set-key (kbd "M-f") 'print-var-at-point)


;;;;; C-M-f - kill rest of line


(add-hook 'org-mode-hook
          (lambda ()
            (define-key org-mode-map (kbd "C-M-f") 'org-kill-line)))

(global-set-key (kbd "C-M-f") 'kill-line)
;;;;; C-g - keyboard-quit
;;;;; M-g - abort-recursive-edit

(global-set-key (kbd "M-g") 'abort-recursive-edit)

;;;;; C-M-g - gnus

(global-set-key (kbd "C-M-g") 'mu4e)

;;;;; C-z - undo-only
(global-set-key (kbd "C-z") 'undo-tree-undo)
;;;;; C-M-z - suspend-frame
(global-set-key (kbd "C-M-z") 'suspend-frame)
;; this is never good in a gui
(when (window-system)
  (defun suspend-frame() (interactive)))

;;;;; C-x - kill-region

(global-set-key (kbd "C-s") 'kill-region)

;;;;; M-x - counsel-m-x


;;  todo; check out smex-show-unbound-commands shows frequently used commands that have no key bindings.
;; this must be before smex-initialize
(setq
 smex-save-file "~/.emacs.d/.smex-items")

;; this uses smex
(global-set-key (kbd "M-x") 'counsel-M-x)

;;;;; C-M-x - cut-to-register

;; same args as copy-to-register
(defun cut-to-register (register start end &optional delete-flag region)
  (interactive (list (register-read-with-preview "Cut to register: ")
                     (region-beginning)
                     (region-end)
                     current-prefix-arg
                     t))
  (copy-to-register register start end t region))

(global-set-key (kbd "C-M-x") 'cut-to-register)

;;;;; C-c - copy

(global-set-key (kbd "C-d") 'kill-ring-save)
(add-hook 'c-mode-hook
          (lambda () (define-key c-mode-map (kbd "C-d") nil)))
(add-hook 'comint-mode-hook
          (lambda ()
            (define-key comint-mode-map (kbd "C-d") nil)))
;; the base map is shared by many c-modes, like java
(add-hook 'c-mode-hook
          (lambda ()
            (define-key c-mode-base-map "\C-d" nil)
            (define-key c-mode-base-map (kbd "<deletechar>") 'c-electric-delete-forward)))


;;;;; M-c - delete-other-windows

(define-key global-map "\M-c" 'delete-other-windows)

;;;;; C-M-c - copy-to-register

(global-set-key (kbd "C-M-c") 'copy-to-register)

;;;;; C-v - yank

(global-set-key (kbd "C-v") 'yank-better)



(defun yank-better (arg)
  "Paste, linewise if our kill ends with a newline.
  I change the behavior of plain prefix. It makes it not do linewise paste,
  because sometimes you want to yank pop and a linewise paste screws that up.
  c-u with no number normally makes the point go before the yank.
  That is pointless for me, as it would be just as easier and less
  thought to pop the mark after yanking cuz it is set to before the mark."
  (interactive "*P")
  (if (and (not (equal arg '(4))) (string-suffix-p "\n" (current-kill 0 t)))
      (beginning-of-line))
  (if (and (stringp mode-name) (string= mode-name "Org"))
      (call-interactively 'org-yank)
    (setq this-command 'yank)
    (call-interactively 'yank (and (not (equal arg '(4)))))))

(put 'yank-better 'delete-selection 'yank)

;;;;; M-v - insert-register

(global-set-key (kbd "M-v") 'insert-register)

;;;;; C-M-v - yank-pop

(global-set-key (kbd "C-M-v") 'yank-pop)

;;;;; C-b - other-window

(global-set-key (kbd "C-b") 'other-window)

;;;;; M-b - isearch-backward-current-symbol

(global-set-key (kbd "M-b") 'isearch-backward-current-symbol)

;;;;; C-M-b - isearch-current-symbol

(global-set-key (kbd "C-M-b") 'isearch-current-symbol)

;;;;; C-tab - ---
;; in terminal, it's just TAB, duplicate keybind.
;;;;; M-tab - ---
;; in terminal it's duplicated of C-M-i
;;;;; C-delete - kill-symbol

(global-set-key (kbd "<C-delete>") 'kill-symbol)
(defun kill-symbol (arg)
  (interactive "p")
  (kill-region (point) (save-excursion (forward-symbol arg) (point))))


;;;;; C-M-delete - kill-sexp

(global-set-key (kbd "<C-M-delete>") 'kill-sexp)

;;;;; C-left-arrow - compile / comint search

(defun set-p (var)
  (and (bound-and-true-p var)
       (not (eq var 'unset))))
(global-set-key (kbd "C-(") 'run)

;; make compile work from the gtags root dir
(defadvice compile (before pre-compile-advice activate)
  (basic-save-buffer)
  (when (set-p ggtags-project-root)
    (setq-local compile-saved-dir default-directory)
    (setq default-directory ggtags-project-root)))
(defadvice compile (after post-compile-advice activate)
  (when (bound-and-true-p compile-saved-dir)
    (setq default-directory compile-saved-dir)))


(add-hook 'c-mode-hook (lambda () (define-key c-mode-map (kbd "C-(") 'compile)))
(add-hook 'comint-mode-hook
          (lambda ()
            (define-key isearch-mode-map (kbd "C-(") 'isearch-repeat-backward)
            (define-key comint-mode-map (kbd "C-(") 'isearch-backward)))


;;;;; C-M-left-arrow - org-shiftup

(add-hook 'org-mode-hook
          (lambda () (define-key org-mode-map (kbd "C-M-(") 'org-shiftup)))

;;;;; C-right-arrow - forward-symbol
;;;;; C-M-right-arrow - org-shiftdown
(add-hook 'org-mode-hook
          (lambda () (define-key org-mode-map (kbd "C-M-)") 'org-shiftdown)))

;;;;; C-backspace - backward-kill-symbol

(define-key terminal-key-map (kbd "4b") 'backward-kill-symbol) ;c-backspace in my konsole

;; c-w is duplicate in terminal
(global-set-key (kbd "<C-backspace>") 'backward-kill-symbol)
(add-hook 'comint-mode-hook
          (lambda ()
            (define-key comint-mode-map (kbd "<C-backspace>") 'backward-kill-word)))
(defun backward-kill-symbol (arg)
  (interactive "p")
  (kill-region (point) (save-excursion (backward-symbol arg) (point))))

;;;;; C-M-backspace - backward-kill-sexp

(global-set-key (kbd "<C-M-backspace>") 'backward-kill-sexp)

;;;; right primary
;;;;; M-8 - delete-window-or-exit

(global-set-key (kbd "M-8") 'delete-window-or-exit)

(defun delete-window-or-exit ()
  "Delete window or exit emacs."
  (interactive)
  (if (condition-case nil (delete-window) (error t))
      (if (or (boundp 'server-process) (> (length (frame-list)) 1))
          (progn (basic-save-buffer) (delete-frame))
        (save-buffers-kill-terminal t))))

;;;;; C-* - split-window-horizontally
(global-set-key (kbd "C-*") 'split-window-horizontally)
;;;;; C-M-* - calc-dispatch

(global-set-key (kbd "C-M-*") 'calc-dispatch)

;;;;; M-9 - kill-buffer

(defun kill-buffer-no-ido ()
  "kill-buffer, avoid the ido remapping"
  (interactive)
  (kill-buffer))
(global-set-key (kbd "M-9") 'kill-buffer-no-ido)

;; strangely, in simple mode, this is overridden.
;; I found this map to override, but it didn't work, so it seems its being bound some other way.
;; I did a grep of the emacs sources, but couldn't find anything.
;; (define-key universal-argument-map [?9 nil)

;;;;; C-M-9 - end server edit
;;  save & kill buffer if it was opened externally via emacsclient


(defun server-edit-save ()
  (interactive)
  (save-buffer)
  (server-edit))
(global-set-key (kbd "C-M-9") 'server-edit-save)

;;;;; C-u - universal-argument
;;;;; C-M-u - search-keybind

(global-set-key (kbd "C-M-u") 'search-keybind)

(defun search-keybind (regexp &optional nlines)
  (interactive (occur-read-primary-args))
  (save-excursion
    (describe-bindings)
    (set-buffer "*Help*")
    (occur regexp)
    (delete-windows-on "*Help*")
    ))

;;;;; C-i -
;; todo: try making use
;; this is the key in terminal
;;M-[ 4 d is undefined

;; previously had this for enhancing graphical keybinds,
;; but afaik its no help since i want terminal to work
;; the same.
;;  (define-key input-decode-map [?\C-i] [C-i])

;;;;; C-M-i - query-replace-regexp

(global-set-key (kbd "C-M-i") 'query-replace-regexp)
(add-hook 'flyspell-mode-hook
          (lambda () (define-key flyspell-mode-map (kbd "C-M-i") nil)))
(add-hook 'text-mode-hook
          (lambda () (define-key text-mode-map (kbd "C-M-i") nil)))


;;;;; C-o - occur

(global-set-key (kbd "C-o") 'occur)

;;;;; C-M-o - counsel-imenu

(global-set-key (kbd "C-M-o") 'counsel-imenu)

;;;;; C-p - move-mouse-to-point

(global-set-key (kbd "C-p") 'move-mouse-to-point)

;;;;; C-M-p - delete-horizontal-space

(global-set-key (kbd "C-M-p") 'delete-horizontal-space)

;;;;; C-j - pop-to-mark

(defun my-pop-to-mark-command ()
  "Jump to mark, and pop a new position for mark off the ring.
                     \(Does not affect global mark ring\)."
  (interactive)
  (pop-to-mark-command)
  (if (and (derived-mode-p 'org-mode) (outline-invisible-p))
      (org-show-context 'mark-goto)))

(global-set-key (kbd "C-j") 'my-pop-to-mark-command)
(add-hook 'ido-setup-hook
          (lambda ()
            (define-key ido-common-completion-map (kbd "C-j") 'ido-select-text)
            ))
(add-hook 'lisp-interaction-mode-hook
          (lambda ()
            (define-key lisp-interaction-mode-map (kbd "C-j") nil)))


;;;;; M-j - previous-error

(global-set-key (kbd "M-j") 'previous-error)

;;;;; C-M-j - register prefix

(define-key global-map (kbd "C-M-j") ctl-x-r-map)
(define-key ctl-x-r-map "m" 'kmacro-to-register)


;;;;; C-k - jump-to-register


(global-set-key (kbd "C-k") 'jump-to-register)

;;;;; M-k - next-error

(global-set-key (kbd "M-k") 'next-error)

;;;;; C-M-k - man

(global-set-key (kbd "C-M-k") 'man)

;;;;; C-l - ivy-switch-buffer

(global-set-key (kbd "C-l") 'ivy-switch-buffer)

;;;;; C-M-l - move cursor top bottom mid, comint clear screen

(global-set-key (kbd "C-M-l") 'move-to-window-line-top-bottom)

;;;;; C-; - used in flyspell, not sure what for, otherwise unbound
;;;;; M-; - comment-dwim
;;;;; C-M-; - comment-current-line-dwim

(defun comment-current-line-dwim ()
  "Comment or uncomment the current line."
  (interactive)
  (save-excursion
    (push-mark (beginning-of-line) t t)
    (end-of-line)
    (comment-dwim nil))
  (move-beginning-of-line 2))
(global-set-key (kbd "C-M-;") 'comment-current-line-dwim)

;;;;; C-m - ---
;; terminal/console needs this. otherwise, we could do this
;; to make C-m be a valid key in graphical mode.
;;  (define-key input-decode-map [?\C-m] [C-m])
;;;;; C-M-m - recursive grep

(define-key global-map (kbd "C-M-m") 'rgrep)

;;;;; C-, - ---
;; not recognized by terminal, can't get konsole keydef file to recognize comma,
;; todo: dig into konsole sources, or try newer version than t8

(add-hook 'flyspell-mode-hook
          (lambda () (define-key flyspell-mode-map (kbd "C-,") nil)))

;;;;; C-M-, - ind-file-in-project

(global-set-key (kbd "C-M-,") 'find-file-in-project)

;;;;; C-. - find recent file

(add-hook 'flyspell-mode-hook
          (lambda () (define-key flyspell-mode-map (kbd "C-.") nil)))
(define-key dot-mode-map (kbd "C-.") nil)
(define-key terminal-key-map (kbd "4c") 'counsel-recentf)
(global-set-key (kbd "C-.") 'counsel-recentf)
(add-hook 'php-mode-hook
          (lambda () (define-key php-mode-map (kbd "C-.") nil)))

;;;;; C-M-. - -

(define-key dot-mode-map (kbd "C-M-.") nil)
;;  (global-set-key (kbd "C-M-.") 'execute-extended-command)

;;;;; C-/ - join lines

(defun vim-style-join-line ()
  (interactive)
  (join-line '(4)))
(global-set-key (kbd "C-/") 'vim-style-join-line)
(define-key undo-tree-map (kbd "C-/") nil)

;;;;; C-M-/ - copy-buffer-file-name

;; haven't bound this atm, todo, maybe someday?
(defun copy-variable (variable)
  (interactive
   (let ((v (variable-at-point))
         (enable-recursive-minibuffers t)
         val)
     (setq val (completing-read (if (symbolp v)
                                    (format
                                     "Describe variable (default %s): " v)
                                  "Describe variable: ")
                                obarray
                                (lambda (vv)
                                  (or (get vv 'variable-documentation)
                                      (and (boundp vv) (not (keywordp vv)))))
                                t nil nil
                                (if (symbolp v) (symbol-name v))))
     (list (if (equal val "")
               v (intern val)))))
  (kill-new (symbol-value variable)))

(defun copy-buffer-file-name ()
  (interactive)
  (let ((name (cond
               ((derived-mode-p 'mu4e-view-mode) (mu4e-message-field-at-point :path))
               (t buffer-file-name))
              ))
    (kill-new name)
    (message name)))


(global-set-key (kbd "C-M-/") 'copy-buffer-file-name)



;;;;; C-up-arrow - org prev headline

;; disabled just because i don't want to accidentally hit it
(define-key global-map "\C-_" nil)
(global-set-key (kbd "<C-_>") 'beginning-of-defun)

(add-hook 'org-mode-hook
          (lambda ()
            (define-key org-mode-map (kbd "\C-_") 'outline-previous-visible-heading)))




;;;;; C-S-up-arrow - winner undo

(global-set-key (kbd "<C-S-_>") 'winner-undo)

;;;;; C-down-arrow - org next headline

(global-set-key (kbd "<C-kp-enter>") 'end-of-defun)

(add-hook 'org-mode-hook
          (lambda ()
            (define-key org-mode-map (kbd "<C-kp-enter>") 'outline-next-visible-heading)))




;;;;; C-M-down-arrow - toggle-mark-activation

(defun toggle-mark-activation ()
  (interactive)
  (if mark-active
      (deactivate-mark t)
    (activate-mark)))

(global-set-key (kbd "<C-M-kp-enter>") 'toggle-mark-activation)

;;;;; C-S-down-arrow  winner redo

(global-set-key (kbd "<C-S-kp-enter>") 'winner-redo)


;;;;; C-S-down-arrow - m-x for major mode

;; todo, update this for ivy
(global-set-key (kbd "<C-S-kp-enter>") 'smex-major-mode-commands)

;;;;; C-lbracket - ----
;;;;; C-M-lbracket - scroll-right

(global-set-key (kbd "C-M-[") 'scroll-right)

;;;;; C-rbracket - fill-paragraph

(global-set-key (kbd "C-]") 'fill-paragraph)

;;;;; C-M-rbracket - scroll-left

(global-set-key (kbd "C-M-]") 'scroll-left)

;;;;; C-return - newline-anywhere

(defun newline-anywhere ()
  "Add a newline from anywhere in the line."
  (interactive)
  (end-of-line)
  (newline-and-indent))
;; todo use alternate keybind make this work for terminal
(global-set-key (kbd "<C-return>") 'newline-anywhere)


;;;;; M-return - plain newline

(defun plain-newline ()
  (interactive)
  (insert "\n"))
(global-set-key (kbd "M-RET") 'plain-newline)


;;;;; C-space - org-edit-special

;; commented due to new keyboard needing ctrl-space for mark
;; (kbd "<C-space>") does not work, (kbd "C-SPC") should work
;; (add-hook 'org-mode-hook
;;           (lambda ()
;;             (define-key org-mode-map (kbd "C-SPC") 'org-edit-special)
;;             ;; org-src-mode-map is broken in git version of emacs.
;;             ;; temporarily use this for exiting edit-special mode.
;;             (global-set-key (kbd "C-M--") 'org-edit-src-exit)
;;             (define-key org-src-mode-map (kbd "C-SPC") 'org-edit-src-exit)))

;;;;; C-M-space - before or under cursor

(global-set-key (kbd "C-M-SPC") 'ispell-word)
;;;; left secondary
;;;;; C-M-4 - widen

(global-set-key (kbd "C-M-4") 'widen)

;;;;; C-tab-key - query-replace


(global-set-key (kbd "<C-kp-add>") 'query-replace)

;;;;; C-t - org cycle todo / toggle comint motion

(add-hook 'org-mode-hook
          (lambda ()
            (define-key org-mode-map (kbd "C-t") 'org-todo)))

(defun my-comint-previous-input (arg)
  (interactive "*p")
  (if (comint-after-pmark-p)
      (comint-previous-input arg)
    (forward-line -1)))

(defun my-comint-next-input (arg)
  (interactive "*p")
  (if (comint-after-pmark-p)
      (comint-next-input arg)
    (forward-line)))

(add-hook 'comint-mode-hook
          (lambda ()
            (define-key comint-mode-map (kbd "C-t") 'comint-toggle-arrow-keys)
            (define-key comint-mode-map (kbd "<up>") 'my-comint-previous-input)
            (define-key comint-mode-map (kbd "<down>") 'my-comint-next-input)))


(defun comint-toggle-arrow-keys ()
  (interactive)
  (toggle-arrow-keys comint-mode-map))

(setq-default comint-arrow-movement nil)
(defun toggle-arrow-keys (map)
  (cond ((lookup-key map (kbd "<up>"))
         (setq-local comint-arrow-movement t)
         (define-key map (kbd "<up>") nil)
         (define-key map (kbd "<down>") nil))
        (t
         (setq-local comint-arrow-movement nil)
         (define-key map (kbd "<up>") 'my-comint-previous-input)
         (define-key map (kbd "<down>") 'my-comint-next-input)
         (goto-char (point-max)))))

(eval-after-load "message"
  '(define-key message-mode-map (kbd "C-t") 'mail-signature))


;;;;; C-M-t - org timestamp

(global-set-key (kbd "C-M-t") 'org-time-stamp-with-time)

;;;;; C-home - start of buffer
;;;;; C-end - end of buffer
;;;; right secondary
;;;;; C-^ - save-buffers-kill-emacs

(global-set-key (kbd "C-^") 'save-buffers-kill-emacs)

;;;;; C-M-6 - insert-small-copyright

(defun insert-small-copyright ()
  (interactive)
  (beginning-of-line)
  (let ((beg (point)))
    (insert "Copyright (C) 2019 Ian Kelling\nThis program is under GPL v. 3 or later, see <http://www.gnu.org/licenses/>")
    (comment-region beg (point))))

(global-set-key (kbd "C-M-6") 'insert-small-copyright)

;;;;; M-7 - calc-embedded-word

(global-set-key (kbd "M-7") 'calc-embedded-word)

;;;;; C-M-7 - insert-full-copyright

(defun insert-full-copyright ()
  (interactive)
  (beginning-of-line)
  (let ((beg (point)))
    (insert "Copyright (C) 2019 Ian Kelling\n")
    (insert "\n")
    (insert "This program is free software: you can redistribute it and/or modify\n")
    (insert "it under the terms of the GNU General Public License as published by\n")
    (insert "the Free Software Foundation, either version 3 of the License, or\n")
    (insert "(at your option) any later version.\n")
    (insert "\n")
    (insert "This program is distributed in the hope that it will be useful,\n")
    (insert "but WITHOUT ANY WARRANTY; without even the implied warranty of\n")
    (insert "MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\n")
    (insert "GNU General Public License for more details.\n")
    (insert "\n")
    (insert "You should have received a copy of the GNU General Public License\n")
    (insert "along with this program.  If not, see <http://www.gnu.org/licenses/>.\n")
    (comment-region beg (point))))

(global-set-key (kbd "C-M-7") 'insert-full-copyright)


;;;;; C-0 - text-scale-reset

(defun text-scale-reset ()
  (interactive)
  (text-scale-set 0))
(global-set-key (kbd "C-0") 'text-scale-reset)

;;;;; C-M-0 - insert-apache

(defun insert-apache ()
  (interactive)
  (beginning-of-line)
  (let ((beg (point)))
    (insert "Copyright (C) 2017 Ian Kelling\n")
    (insert "\n")
    (insert "Licensed under the Apache License, Version 2.0 (the \"License\");\n")
    (insert "you may not use this file except in compliance with the License.\n")
    (insert "You may obtain a copy of the License at\n")
    (insert "\n")
    (insert "    http://www.apache.org/licenses/LICENSE-2.0\n")
    (insert "\n")
    (insert "Unless required by applicable law or agreed to in writing, software\n")
    (insert "distributed under the License is distributed on an \"AS IS\" BASIS,\n")
    (insert "WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n")
    (insert "See the License for the specific language governing permissions and\n")
    (insert "limitations under the License.\n")
    (comment-region beg (point))))
(global-set-key (kbd "C-M-0") 'insert-apache)


;;;;; C-M-- - org-edit-src-exit
;;;;; C-y - undo

(global-set-key (kbd "C-y") 'undo-tree-redo)
(add-hook 'org-mode-hook
          (lambda () (define-key org-mode-map (kbd "C-y") nil)))


;;;;; C-\ - sr-speedbar-toggle
(global-set-key (kbd "C-\\") 'sr-speedbar-toggle)

;;;;; C-M-\ - mark-defun

(global-set-key (kbd "C-M-\\") 'mark-defun)

;;;;; C-h - help-prefix

;;;;; C-' - val-expression

(global-set-key (kbd "C-'") 'eval-expression)

;;;;; C-n - unpop to mark

(defun unpop-to-mark-command ()
  "Unpop off mark ring. Does nothing if mark ring is empty."
  (interactive)
  (when mark-ring
    (let ((pos (marker-position (car (last mark-ring)))))
      (if (not (= (point) pos))
          (goto-char pos)
        (setq mark-ring (cons (copy-marker (mark-marker)) mark-ring))
        (set-marker (mark-marker) pos)
        (setq mark-ring (nbutlast mark-ring))
        (goto-char (marker-position (car (last mark-ring))))))))

(global-set-key (kbd "C-n") 'unpop-to-mark-command)

;;;;; C-M-n - narrow-to-region

(global-set-key (kbd "C-M-n") 'narrow-to-region)

;;;;; C-escape - find-tag

(global-set-key (kbd "<C-escape>") 'find-tag)


;; Local Variables:
;; eval: (outline-minor-mode)
;; outline-regexp: "\\( *\\);;;\\{1,8\\} "
;; End: